View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14781_low_1 (Length: 580)
Name: NF14781_low_1
Description: NF14781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14781_low_1 |
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| [»] scaffold0047 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 4 - 562
Target Start/End: Original strand, 47366468 - 47367023
Alignment:
| Q |
4 |
tcactgatattttttgaaaaccctgatcccttgtacagttagaaatgtaacatttaataatatttacagatggacgaaaacagtgagcgaaagtgggatg |
103 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47366468 |
tcactgatcttttttgaaaaccctgatcccttgtacagttagaaatgtaacatttaat---atttacagatggacgaaaacagtgagcgaaagtgggatg |
47366564 |
T |
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| Q |
104 |
acagcattttaatgaagacagaggtagattcttctagcataagcaagaaagaagctattattaggaaagaaagagtaaaagaatactcatataaccatag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366565 |
acagcattttaatgaagacagaggtagattcttctagcataagcaagaaagaagctattattaggaaagaaagagtaaaagaatactcatataaccatag |
47366664 |
T |
|
| Q |
204 |
ggtaagaagctcttaagactagttttactcttactaattttcatactaactgagaaatcctttcagaaatcagctgaatcagaaagaaaaattggaagat |
303 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366665 |
ggtaagaagctcttaagcctagttttactcttactaattttcatactaactgagaaatcctttcagaaatcagctgaatcagaaagaaaaattggaagat |
47366764 |
T |
|
| Q |
304 |
ggaagtactggatggagcagtgggtagacacacagcattctaagagtaaagaacttgaagatttagactcagtttttggttcacactgtagagaaatgga |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| |
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| T |
47366765 |
ggaagtactggatggagcagtgggtagacacacagcattctaagagtaaagaacttgaagatttagactcagttttcggttcacgctgtagagaagtgga |
47366864 |
T |
|
| Q |
404 |
ggattgtggaagaagacagctaaaatttagacaaattcagagacaaaatgaagttgaaagattcgactctccattactatcttcaagaaaatatttacac |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366865 |
ggattgtggaagaagacagctaaaatttagacaaattcagagacaaaatgaagttgaaagattcgactctccattactatcttcaagaaaatatttacac |
47366964 |
T |
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| Q |
504 |
cataggagcaaaaatttagagggagaagaccattcctttcaaagctctcatagaattcc |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |
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| T |
47366965 |
cataggagcaaaaatttagagggagaagaccattcctttcaaagatctcacacaattcc |
47367023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 39455390 - 39455468
Alignment:
| Q |
296 |
tggaagatggaagtactggatggagcagtgggtagacacacagcattctaagagtaaagaacttgaagatttagactcagtt |
377 |
Q |
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| T |
39455390 |
tggaagatggaggta-tggatgaagcagtgggtagacacaa--cattctaaaaataaagaacctgaagatttagactcagtt |
39455468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 15976 - 16114
Alignment:
| Q |
71 |
agatggacgaaaacagtgagcgaaagtgggatgacagcattttaatgaagacagaggtagattcttctagcataagcaagaaagaagctattattaggaa |
170 |
Q |
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|||||||| ||||||||| |||||||||||||||| | |||| ||||| |||||||||| ||||| |||| | ||||||||||| ||||||| || |
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| T |
15976 |
agatggactcaaacagtgaaagaaagtgggatgacagtactttattgaaggaagaggtagatgcttcttgcatgatcaagaaagaaggcattattaagag |
16075 |
T |
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| Q |
171 |
agaaagagtaaaagaatactcatataaccatagggtaag |
209 |
Q |
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| T |
16076 |
agaaagaataaaagaatacacatttaatcatagagtaag |
16114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 16454 - 16536
Alignment:
| Q |
296 |
tggaagatggaagtactggatggagcagtgggtagacacacagcattctaagagtaaagaacttgaagatttagactcagttt |
378 |
Q |
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||||||||||| ||||||| ||||||| |||||||| ||||| | |||||| || |||||||| ||||||||||||||||||| |
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| T |
16454 |
tggaagatggaggtactggctggagcaatgggtagatacacaactttctaaaagcaaagaactcgaagatttagactcagttt |
16536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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