View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14781_low_5 (Length: 380)
Name: NF14781_low_5
Description: NF14781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14781_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 46957252 - 46957598
Alignment:
| Q |
16 |
atgaagtgtctttctagactaatgccattatctgatgtttaaattaatttgaagttatcaagcctttggtggagtgtcatacttgagatcagctaaagac |
115 |
Q |
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| T |
46957252 |
atgaagtgtctttctagactaatgccattatctgatgtttaaattaatttgaagttatcaagcctttggtggagtgtcatacttgagatcagctaaagac |
46957351 |
T |
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| Q |
116 |
attgcgtataatgttgccttgttcattgccaagaaaggaagctatgttaattactactccacatggtatcatcaccaactatattctataatctgttcct |
215 |
Q |
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| T |
46957352 |
attgcgtataatgttcccttgttcattgccaagaaaggaagctatgttaattactactccacatggtatcatcactatctatattctataatctgttcct |
46957451 |
T |
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| Q |
216 |
cttttctctcttacttcnnnnnnngagcatgtagtaaaataccagtagatttttcaaattatttgaatttgaatatatttttcttggtaacttacttgat |
315 |
Q |
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| T |
46957452 |
cttttctctcttacttctttttttgaccatgtagtaaaataccagtagatttttcaaattatttgaatttgaatatatttttcttggtaacttacttgat |
46957551 |
T |
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| Q |
316 |
ggagctccactggatgaatatggtatatggttctttcttttcttcattt |
364 |
Q |
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| T |
46957552 |
ggagctccactggatgaatatgg--tatggttctttcttttcttcattt |
46957598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 40100891 - 40100985
Alignment:
| Q |
74 |
caagcctttggtggagtgtcatacttgagatcagctaaagacattgcgtataatgttgccttgttcattgccaagaaaggaagctatgttaatta |
168 |
Q |
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| T |
40100891 |
caagcttttggtggagcaccatacatgagatcagcttcagacattgcctataatgttgccttgttcatagcaaagaaaggaagttatgtcaatta |
40100985 |
T |
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