View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14781_low_9 (Length: 231)
Name: NF14781_low_9
Description: NF14781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14781_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 10202854 - 10202718
Alignment:
| Q |
22 |
ccaccttcaaaggctcaaaccaccgtactcacctccctacctcatggcatttcccacgtcttccttcctccggtcaccctctccgacctcccacccaaca |
121 |
Q |
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| T |
10202854 |
ccaccttcaaaggctcaaaccaccgtactcacctccctacctcatggcatttcccacgtcttccttcctccgatcaccctctccgacctcccacccaaca |
10202755 |
T |
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| Q |
122 |
ccaaacccgaaacactcatgacagcaacaaccgttcg |
158 |
Q |
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| T |
10202754 |
ccaaacccgaaacactcatgacagccaccaccgttcg |
10202718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 10209927 - 10209807
Alignment:
| Q |
22 |
ccaccttcaaaggctcaaaccaccgtactcacctccctacctcatggcatttcccacgtcttccttcctccggtcaccctctccgacctcccacccaaca |
121 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10209927 |
ccaccttcaaaggctcaaacaaccgtactcacctccctacctcatggcatttcccacgtcttcctccctccggtcaccctctccgacctcccacccaaca |
10209828 |
T |
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| Q |
122 |
ccaaacccgaaacactcatga |
142 |
Q |
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||||||| ||| ||||||||| |
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| T |
10209827 |
ccaaacctgaaccactcatga |
10209807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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