View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14782_high_1 (Length: 490)

Name: NF14782_high_1
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14782_high_1
NF14782_high_1
[»] chr3 (3 HSPs)
chr3 (18-483)||(42091810-42092276)
chr3 (426-481)||(54437805-54437860)
chr3 (425-481)||(21570366-21570422)
[»] chr6 (3 HSPs)
chr6 (426-482)||(32342599-32342655)
chr6 (430-472)||(20206485-20206527)
chr6 (430-472)||(22100508-22100550)
[»] chr4 (3 HSPs)
chr4 (337-481)||(25062396-25062544)
chr4 (426-466)||(20512704-20512744)
chr4 (426-470)||(54000079-54000123)
[»] chr8 (3 HSPs)
chr8 (337-467)||(7405428-7405556)
chr8 (337-482)||(32166655-32166799)
chr8 (335-391)||(29093611-29093668)
[»] chr5 (7 HSPs)
chr5 (426-478)||(14258902-14258954)
chr5 (426-466)||(973110-973150)
chr5 (427-470)||(37077760-37077803)
chr5 (430-472)||(2243346-2243388)
chr5 (426-472)||(7215326-7215372)
chr5 (437-481)||(972839-972883)
chr5 (447-483)||(39730325-39730361)
[»] chr1 (7 HSPs)
chr1 (430-472)||(35956986-35957028)
chr1 (426-472)||(42819620-42819666)
chr1 (430-472)||(52432836-52432878)
chr1 (425-481)||(34601630-34601686)
chr1 (426-482)||(46080970-46081026)
chr1 (426-483)||(10775162-10775219)
chr1 (426-466)||(2534295-2534334)
[»] chr7 (5 HSPs)
chr7 (335-411)||(31152824-31152901)
chr7 (335-411)||(31171385-31171462)
chr7 (426-460)||(27651382-27651416)
chr7 (426-483)||(8900669-8900726)
chr7 (426-470)||(34891532-34891576)
[»] chr2 (6 HSPs)
chr2 (425-482)||(16576246-16576303)
chr2 (426-479)||(28282823-28282876)
chr2 (426-470)||(9931278-9931322)
chr2 (335-400)||(28282725-28282791)
chr2 (426-471)||(16576416-16576461)
chr2 (425-481)||(2248957-2249013)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 42092276 - 42091810
Alignment:
Q  18 aataatcaagaaatcaaaactctgataccaattgaagttgatggaaaccctaaaaagaggaggtttgaattatgttgactatttaaaaatctttcttgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42092276 aataatcaagaaatcaaaactctgataccaattgaagttgatggaaaccctaaaaagaggaggtttgaattatgttgactatttaaaaatctttcttgta 42092177  T
Q  118 ttaatttagacatgaaagtctttttgaattagcttttcttaaaagatttcaacaactcaaatagctctttatcaactcatttaacttcatttgaattcaa 217  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  42092176 ttaacttagacataaaagtctttttgaattagcttttcttaaaaggtttcgacagctcaaatagctctttatcaactcatttaacttcatttgaatccaa 42092077  T
Q  218 ttgagagcttgaagttaaaacataaagaatttgtgctaaatnnnnnnngagataatggaagagataaatatgcaatagttcacatccaaggtgaatgcta 317  Q
    |||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42092076 ttgagagcttgaagttaaaacataaataatttgtgctaaataaataaagagataatggaagagataaatatgcaatagttcacatccaaggtgaatgcta 42091977  T
Q  318 catctagtcctcctacatccatctctttcgttccataatcaagtcttacttgtgatta-gggtaaattacccccaattcgtcaagggatattgtatgtct 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  42091976 catctagtcctcctacatccatctctttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtct 42091877  T
Q  417 cgccaatgcttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctct 483  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42091876 caccaatgctttttccttacaattaattatcattttcatctcaaaaacatcaaactttttcatctct 42091810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 481
Target Start/End: Original strand, 54437805 - 54437860
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 481  Q
    |||||||||||||| | ||| |||||| |||||||||||||||||||  |||||||    
T  54437805 ttttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 21570366 - 21570422
Alignment:
Q  425 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 481  Q
    |||| ||||||||||| ||||  ||||||||| ||| ||||||||||| ||||||||    
T  21570366 ctttattcttacaattgattactattttcatcacaagaacatcaaactttttcatct 21570422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 32342599 - 32342655
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 482  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  32342599 ttttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctc 32342655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 472
Target Start/End: Complemental strand, 20206527 - 20206485
Alignment:
Q  430 ttcttacaattaattatcattttcatctcaaaaacatcaaact 472  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaact 20206485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 472
Target Start/End: Complemental strand, 22100550 - 22100508
Alignment:
Q  430 ttcttacaattaattatcattttcatctcaaaaacatcaaact 472  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaact 22100508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 481
Target Start/End: Original strand, 25062396 - 25062544
Alignment:
Q  337 catctctttcgttccataatcaagtcttacttgtgatta-gggtaaattacccccaattcgtcaagggatattgtatgtctcgccaat---gcttttttc 432  Q
    |||||| || ||||||||||||| || ||||||| |||| ||||||||||||| |||||| |||||| ||| |||| |  || |||||   | |||||||    
T  25062396 catctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatcaaggaataatgtaggcttcaccaatttggtttttttc 25062495  T
Q  433 ttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 481  Q
    ||||||| ||||| | |||||||||||| || ||||||||  |||||||    
T  25062496 ttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 466
Target Start/End: Complemental strand, 20512744 - 20512704
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacat 466  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  20512744 ttttttcttacaattagttatctttttcatctcaaaaacat 20512704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 54000123 - 54000079
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaa 470  Q
    ||||||||||| || ||||| |||||||||||||| |||||||||    
T  54000123 ttttttcttactatcaattaccattttcatctcaagaacatcaaa 54000079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 467
Target Start/End: Complemental strand, 7405556 - 7405428
Alignment:
Q  337 catctctttcgttccataatcaagtcttacttgtgattaggg-taaattacccccaattcgtcaagggatattgtatgtctcgccaa-tgcttttttctt 434  Q
    |||||| |||||||||||||| |||||||    ||||||||| ||||||| |||||| || ||||||| || |||||| | | |||| |  |||||||||    
T  7405556 catctcgttcgttccataatcgagtctta----tgattaggggtaaattatccccaactcatcaaggggtaatgtatgccccaccaaattgttttttctt 7405461  T
Q  435 acaattaattatcattttcatctcaaaaacatc 467  Q
    |||||||||| |||||||||| |||| ||||||    
T  7405460 acaattaattgtcattttcatttcaagaacatc 7405428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 482
Target Start/End: Complemental strand, 32166799 - 32166655
Alignment:
Q  337 catctctttcgttccataatcaagtcttacttgtgattag-ggtaaattacccccaattcgtcaagggatattgtatgtctcgccaatgcttttttctta 435  Q
    |||||||||||||||| |||| | || ||||||| ||||| |||||||||| |||||||| |||| | | | |||||| |||  | ||  ||||| ||||    
T  32166799 catctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatg-ctcatcgatagttttt-ctta 32166702  T
Q  436 caattaattatcattttcatctcaaaaacatcaaactctttcatctc 482  Q
    | || |||||||||||||||||||| |||||||||||  ||||||||    
T  32166701 ctatcaattatcattttcatctcaagaacatcaaacttcttcatctc 32166655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 29093611 - 29093668
Alignment:
Q  335 tccatctctttcgttccataatcaagtcttacttgtgatt-agggtaaattaccccca 391  Q
    ||||||||||||||||||||||||| || ||||||  ||| |||||||||||||||||    
T  29093611 tccatctctttcgttccataatcaaatcatacttggtattgagggtaaattaccccca 29093668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 478
Target Start/End: Complemental strand, 14258954 - 14258902
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttca 478  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||| |||||    
T  14258954 ttttttattataattatttatcattttcatctcaaaaacatcaaactttttca 14258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 466
Target Start/End: Original strand, 973110 - 973150
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacat 466  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  973110 ttttttcttacaattagttatcatttttatctcaaaaacat 973150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 470
Target Start/End: Original strand, 37077760 - 37077803
Alignment:
Q  427 tttttcttacaattaattatcattttcatctcaaaaacatcaaa 470  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaa 37077803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 472
Target Start/End: Complemental strand, 2243388 - 2243346
Alignment:
Q  430 ttcttacaattaattatcattttcatctcaaaaacatcaaact 472  Q
    |||||||||||| ||| |||||||||||||| |||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaact 2243346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 7215372 - 7215326
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaact 472  Q
    |||||||||||||| || || |||||||||||||| |||||||||||    
T  7215372 ttttttcttacaatcaactaccattttcatctcaagaacatcaaact 7215326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 481
Target Start/End: Original strand, 972839 - 972883
Alignment:
Q  437 aattaattatcattttcatctcaaaaacatcaaactctttcatct 481  Q
    ||||| |||||||||||||||||| |||||||||||  |||||||    
T  972839 aattagttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 39730361 - 39730325
Alignment:
Q  447 cattttcatctcaaaaacatcaaactctttcatctct 483  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctct 39730325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 472
Target Start/End: Original strand, 35956986 - 35957028
Alignment:
Q  430 ttcttacaattaattatcattttcatctcaaaaacatcaaact 472  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  35956986 ttcttacaattaattaccatttttatctcaaaaacatcaaact 35957028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 42819620 - 42819666
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaact 472  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||    
T  42819620 ttttttcttacaatcaattatcattttcatctcaagaacataaaact 42819666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 472
Target Start/End: Original strand, 52432836 - 52432878
Alignment:
Q  430 ttcttacaattaattatcattttcatctcaaaaacatcaaact 472  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaact 52432878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 481
Target Start/End: Complemental strand, 34601686 - 34601630
Alignment:
Q  425 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 481  Q
    |||| ||||||| |||| |||| ||||||||||||||||||||||||  ||||||||    
T  34601686 ctttattcttacgattagttattattttcatctcaaaaacatcaaacgttttcatct 34601630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 46080970 - 46081026
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 482  Q
    |||||||||||||| ||||| |||||||||||||| ||||| |||||  ||||||||    
T  46080970 ttttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctc 46081026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 483
Target Start/End: Original strand, 10775162 - 10775219
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctct 483  Q
    |||||||||| ||| ||||| ||||||||||| || |||||||||||  |||||||||    
T  10775162 ttttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctct 10775219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 466
Target Start/End: Complemental strand, 2534334 - 2534295
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacat 466  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  2534334 ttttttcgtacaattaattatcatttt-atctcaaaaacat 2534295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 411
Target Start/End: Complemental strand, 31152901 - 31152824
Alignment:
Q  335 tccatctctttcgttccataatcaagtcttacttgtgattag-ggtaaattacccccaattcgtcaagggatattgta 411  Q
    ||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||||||||||| ||||| |||| ||||    
T  31152901 tccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgta 31152824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 411
Target Start/End: Complemental strand, 31171462 - 31171385
Alignment:
Q  335 tccatctctttcgttccataatcaagtcttacttgtgattag-ggtaaattacccccaattcgtcaagggatattgta 411  Q
    ||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||||||||||| ||||| |||| ||||    
T  31171462 tccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgta 31171385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 460
Target Start/End: Complemental strand, 27651416 - 27651382
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaa 460  Q
    |||||||||||||| ||||||||||||||||||||    
T  27651416 ttttttcttacaatcaattatcattttcatctcaa 27651382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 483
Target Start/End: Complemental strand, 8900726 - 8900669
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctct 483  Q
    |||||||||||||| ||||| |||||| ||||||| |||| ||||||  |||||||||    
T  8900726 ttttttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctct 8900669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 34891532 - 34891576
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaa 470  Q
    ||||||||||| |||| |||||||||| ||||||| |||||||||    
T  34891532 ttttttcttactattagttatcattttgatctcaagaacatcaaa 34891576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 16576246 - 16576303
Alignment:
Q  425 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 482  Q
    ||||||||||||||| ||||| ||||||| |||||| |||||||||||  ||||||||    
T  16576246 cttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctc 16576303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 479
Target Start/End: Original strand, 28282823 - 28282876
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcat 479  Q
    |||||||||||||| |||||||||||||||||| | || |||||||| ||||||    
T  28282823 ttttttcttacaatcaattatcattttcatctccataatatcaaactttttcat 28282876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 9931278 - 9931322
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaa 470  Q
    |||||| |||||||| |||||||||||||||| ||||||||||||    
T  9931278 tttttttttacaatttattatcattttcatcttaaaaacatcaaa 9931322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 28282725 - 28282791
Alignment:
Q  335 tccatctctttcgttccataatcaagtcttacttgtgatta-gggtaaattacccccaattcgtcaa 400  Q
    |||||||| |||||||||||||||| | |||||||| |||| ||||||||||||  |||||| ||||    
T  28282725 tccatctcattcgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa 28282791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 16576416 - 16576461
Alignment:
Q  426 ttttttcttacaattaattatcattttcatctcaaaaacatcaaac 471  Q
    |||||||||||||| | ||||||||||||| ||||||||| |||||    
T  16576416 ttttttcttacaatcatttatcattttcatttcaaaaacaacaaac 16576461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 481
Target Start/End: Complemental strand, 2249013 - 2248957
Alignment:
Q  425 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 481  Q
    |||| |||||| ||||| ||| |||||||||||||||||||| |||||  |||||||    
T  2249013 ctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatct 2248957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University