View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14782_high_3 (Length: 396)
Name: NF14782_high_3
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 37971824 - 37971429
Alignment:
| Q |
1 |
aaatcatattatatgatctgtggttgttgtgatgcattgcttgacatatttttaacaaatatattttctttttgtcaatagatccagtcaagcttagctc |
100 |
Q |
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| T |
37971824 |
aaatcatattatatgatctgtggttgctgtgatgcattgcttgacatatttttaacaaatatattttctttttgtcaatagatccagtcaagcttagctc |
37971725 |
T |
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| Q |
101 |
cttcatcggccgatccccacggcaattggcgtgaatgcagattaaaccataataaatgttccggttcacaaatccaatttctgcaaggtgggttgatgca |
200 |
Q |
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| T |
37971724 |
cttcatcggccgatccccacggcaattggcgtgaatgcagattaaaccataataaatgttccggttcacaaatccaatttctgcaaggtgggttgatgca |
37971625 |
T |
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| Q |
201 |
ttagaaattgctgtcattaatttagaagtacacaaaattctcaacaatttagtcagtgaataaagtcatttaactataatctgatacaggattcaggaat |
300 |
Q |
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| T |
37971624 |
ttagaaattgctgtcattaatttagaagtacacaaaattctcaacaatttagttagtgaataaagtcatttaactataatctgatacaggattcaggaat |
37971525 |
T |
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| Q |
301 |
cacatggtggatgttgtgagaggcttctcaagatcaagtccaaatggattgttcataaattcatgctttgctaactgccaatccgagaggccagac |
396 |
Q |
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| T |
37971524 |
cacatggtgaatgttgtgagaggcttctcaagatcaagtcaaaatggattgttcataaattcatgctttgctcactgccaatctgagaggcaagac |
37971429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 45668577 - 45668687
Alignment:
| Q |
80 |
agatccagtcaagcttagctccttcatcggccgatccccacggcaattggcgtgaatgcagattaaaccataataaatgttccggttcacaaatccaatt |
179 |
Q |
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||||||||||||| ||||||||| |||| || |||||||| ||| |||||| ||||||||||||||||||| |||||| | | |||||||| |||| |
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| T |
45668577 |
agatccagtcaagtttagctcctccatcagcagatccccatggctattggcatgaatgcagattaaaccatgctaaatgcacaaggccacaaatcaaatt |
45668676 |
T |
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| Q |
180 |
tctgcaaggtg |
190 |
Q |
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| T |
45668677 |
tctgcaaggtg |
45668687 |
T |
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