View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14782_low_1 (Length: 528)
Name: NF14782_low_1
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 37970864 - 37971258
Alignment:
| Q |
1 |
gagtgagatgagtgagacagaagaagtttggctcatctgaaaaccaaatggtggcatgtgttatcacaagggtaaggacaatcaatgtccttaactgcgg |
100 |
Q |
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| T |
37970864 |
gagtgagatgagtgagacagaagaagtttggctcatctgaaaaccaaatggtggcatgtgttatcacaagggtaaggacaatcaatgtccttaactgcgg |
37970963 |
T |
|
| Q |
101 |
ctcggtcaaaataccagtctccaacagccagagcaattgcctacatattgtcaatgcataagggttagatatgacatataaacaataagatcttaaatct |
200 |
Q |
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| T |
37970964 |
ctcggtcaaaataccagtctccaacagccagagcaattgcctacatattgtcaatgcataagggttagatatgacatataaacaataagatcttaaatct |
37971063 |
T |
|
| Q |
201 |
taaaaagagcagtatgggtagatttcaaagactaacgatagaaactaaagagcaacagaaatagcagtgtcatgaaaaataatggaatcatcaccgctgc |
300 |
Q |
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| T |
37971064 |
taaaaagagcagtatgagtagatttcaaagactaacgatagaaactaaagagcaacagaaatagcagtgtcatgaaaaataatggaatcatcaccgctgc |
37971163 |
T |
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| Q |
301 |
ataacactatgttatattatggctaataaacaaagaaagcataaacaatttcctagaattctccatgtgaatattttatggcaaaaacaggtgta |
395 |
Q |
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| T |
37971164 |
ataacactatgttatattatggctaataaacaaagaaagcataaacaatttcctagaattctccatgtgaatattttatggcaaaaacaggtgta |
37971258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 461 - 528
Target Start/End: Original strand, 37971325 - 37971392
Alignment:
| Q |
461 |
tcgcataccagcacggaaacctataatattttaactaaaactgcatagggatatgtgaaactcacctt |
528 |
Q |
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| T |
37971325 |
tcgcataccagcacggaaacctataatattttaactagagctgcatagggatatgtgaaactcacctt |
37971392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 45669189 - 45669060
Alignment:
| Q |
27 |
tttggctcatctgaaaaccaaatggtggcatgtgttatcacaagggtaaggacaatcaatgtccttaactgcggctcggtcaaaataccagtctccaaca |
126 |
Q |
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||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||| |
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| T |
45669189 |
tttggctcaactgaaaaccaaatggtgacatgtattatcacaagggtaaggacaatcaatgaccttaacaccttctcgatcaaaataccagtctccaaca |
45669090 |
T |
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| Q |
127 |
gccagagcaattgcctacatattgtcaatg |
156 |
Q |
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| T |
45669089 |
gctaaagcaattacctacatttagtcaatg |
45669060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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