View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14782_low_10 (Length: 285)
Name: NF14782_low_10
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 11024767 - 11024518
Alignment:
| Q |
18 |
atcatcatagtcatgtttcaagtagttgaaatgagattctgaaagattaaggttgtggatatgtttgtaaagacaactttgtggatcggatagttgaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11024767 |
atcatcatagtcatgtttcaagtagttgaaatgagattctgaaagattaaggttgtggatatgtttgtaaagacaactttgtggatcggatagttgaata |
11024668 |
T |
|
| Q |
118 |
gtttggtgtttgtagtcaatgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatcctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11024667 |
gtttggtgtttgtagtcaatgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatcctg |
11024568 |
T |
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| Q |
218 |
aatagccacacatgggtgattgacggtttttgattcggaaagggaacttg |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11024567 |
aatagccacacatgggtgattgacggtttttgattcggaaagggaacttg |
11024518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 11000874 - 11001080
Alignment:
| Q |
19 |
tcatcatagtcatgtttcaagtagttgaaatgagattctgaaagattaaggttgtggatatgtttgtaaagacaactttgtggatcggatagttgaatag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11000874 |
tcatcatagtcatgtttcaagtagttgaaatgagattctgaaagattgaggttgttgatatgtttgcaaagacaactttgtggatcggatagttgaatag |
11000973 |
T |
|
| Q |
119 |
tttggtgtttgtagtcaatgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatcctga |
218 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| || | |
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| T |
11000974 |
tttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaagccagg |
11001073 |
T |
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| Q |
219 |
atagcca |
225 |
Q |
| |
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||||||| |
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| T |
11001074 |
atagcca |
11001080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 11039832 - 11039625
Alignment:
| Q |
18 |
atcatcatagtcatgtttcaagtagttgaaatgagattctgaaagattaaggttgtggatatgtttgtaaagacaactttgtggatcggatagttgaata |
117 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| |
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| T |
11039832 |
atcatcgtagtcatgtttcaagtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatg |
11039733 |
T |
|
| Q |
118 |
gtttggtgtttgtagtcaatgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatcctg |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |
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| T |
11039732 |
gtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaatctg |
11039633 |
T |
|
| Q |
218 |
aatagcca |
225 |
Q |
| |
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||||||| |
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| T |
11039632 |
gatagcca |
11039625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 10990313 - 10990110
Alignment:
| Q |
22 |
tcatagtcatgtttcaagtagttgaaatgagattctgaaagattaaggttgtggatatgtttgtaaagacaactttgtggatcggatagttgaatagttt |
121 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| |||| |
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| T |
10990313 |
tcatagtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatggttt |
10990214 |
T |
|
| Q |
122 |
ggtgtttgtagtcaatgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatcctgaata |
221 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||| |
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| T |
10990213 |
ggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagttcaatcatagtttcattatttgatgaacaaaataactcaaaatctggata |
10990114 |
T |
|
| Q |
222 |
gcca |
225 |
Q |
| |
|
|||| |
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|
| T |
10990113 |
gcca |
10990110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 10929183 - 10929002
Alignment:
| Q |
43 |
ttgaaatgagattctgaaagattaaggttgtggatatgtttgtaaagacaactttgtggatcggatagttgaatagtttggtgtttgtagtcaatgttct |
142 |
Q |
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||||||||||| |||||||||||||||||||| ||| |||| || |||| ||||||||||||||||| ||||||||||| | ||||||| ||||||| |
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| T |
10929183 |
ttgaaatgagaagatgaaagattaaggttgtggaactgtatgtataggcaaccttgtggatcggatagttcaatagtttggtttgtgtagtcgatgttct |
10929084 |
T |
|
| Q |
143 |
tgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatcctgaatagcc |
224 |
Q |
| |
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|||| |||||||||||||| || || |||||||| |||||||| |||||||||| ||||||||| ||||| |||| |||||| |
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| T |
10929083 |
tgaccttgagtttcactttatgagggagttcaatcatagtttccttatttgatgaacaaaataaatcaaaacctggatagcc |
10929002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 10976994 - 10976854
Alignment:
| Q |
120 |
ttggtgtttgtagtcaatgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatcctgaa |
219 |
Q |
| |
|
||||||| | |||||||||||||| |||||||||||||| ||| || |||||||| | ||||| ||||| ||| ||| ||||||||||| |||| | |
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| T |
10976994 |
ttggtgtctatagtcaatgttcttaacattgagtttcaccgagtgagggagttcaatcgttgtttcgttattcaatgaacagaataactcaaaacctgga |
10976895 |
T |
|
| Q |
220 |
tagccacacatgggtgattgacggtttttgattcggaaagg |
260 |
Q |
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|||||||||||||||| |||||||||||||| || |||||| |
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| T |
10976894 |
tagccacacatgggtgcttgacggtttttgaatcagaaagg |
10976854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 10906605 - 10906495
Alignment:
| Q |
115 |
atagtttggtgtttgtagtcaatgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatc |
214 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||| ||| || |||||||| || ||||| ||||| |||| ||||||||||||||| | |
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| T |
10906605 |
atagtttggtgtctgtagtcaatgttcttaacattgagtttcatcgagtgagggagttcaatcattgtttcgttattcgatgaacaaaataactcaaaac |
10906506 |
T |
|
| Q |
215 |
ctgaatagcca |
225 |
Q |
| |
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||| ||||||| |
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|
| T |
10906505 |
ctggatagcca |
10906495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 10995352 - 10995443
Alignment:
| Q |
137 |
tgttcttgacattgagtttcactttgtgtggaagttcaatgatagtttcattatttgatgtacaaaataactcaaatcctgaatagccacaca |
229 |
Q |
| |
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|||| |||||||| |||||||||||||| || |||||| | ||||||||||||||||||| ||||||||||||||| || | |||||||||| |
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| T |
10995352 |
tgtttttgacatttagtttcactttgtgagggagttca-tcatagtttcattatttgatgaacaaaataactcaaagccagggtagccacaca |
10995443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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