View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14782_low_11 (Length: 247)

Name: NF14782_low_11
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14782_low_11
NF14782_low_11
[»] chr2 (6 HSPs)
chr2 (19-230)||(25550019-25550230)
chr2 (41-156)||(8761171-8761288)
chr2 (88-156)||(10128515-10128584)
chr2 (78-156)||(37965516-37965596)
chr2 (28-84)||(37965265-37965321)
chr2 (119-156)||(15140822-15140859)
[»] chr4 (9 HSPs)
chr4 (28-156)||(53472528-53472655)
chr4 (41-156)||(53469652-53469768)
chr4 (28-156)||(10395977-10396106)
chr4 (38-156)||(27272585-27272705)
chr4 (32-155)||(50887389-50887513)
chr4 (71-153)||(32015180-32015263)
chr4 (19-155)||(29235094-29235236)
chr4 (41-109)||(9010409-9010477)
chr4 (72-156)||(13816957-13817042)
[»] chr3 (4 HSPs)
chr3 (32-152)||(25889642-25889763)
chr3 (32-155)||(30046435-30046558)
chr3 (31-156)||(31141418-31141543)
chr3 (75-155)||(37133804-37133885)
[»] chr7 (5 HSPs)
chr7 (37-156)||(7961791-7961911)
chr7 (32-142)||(11269985-11270096)
chr7 (37-137)||(36207982-36208078)
chr7 (19-155)||(1716606-1716743)
chr7 (53-101)||(38969375-38969423)
[»] chr6 (14 HSPs)
chr6 (32-157)||(13555994-13556120)
chr6 (39-156)||(2921839-2921957)
chr6 (76-156)||(13558009-13558090)
chr6 (28-154)||(16910083-16910209)
chr6 (72-141)||(2923188-2923258)
chr6 (53-156)||(11677136-11677240)
chr6 (41-156)||(11678854-11678966)
chr6 (71-156)||(16403538-16403623)
chr6 (28-135)||(11681440-11681548)
chr6 (41-156)||(14721723-14721838)
chr6 (75-141)||(22880002-22880069)
chr6 (37-156)||(27340600-27340718)
chr6 (37-156)||(27401340-27401458)
chr6 (75-141)||(22898117-22898184)
[»] chr5 (4 HSPs)
chr5 (48-156)||(19670684-19670793)
chr5 (75-156)||(32795563-32795645)
chr5 (72-156)||(26896594-26896679)
chr5 (94-156)||(32796346-32796409)
[»] chr1 (7 HSPs)
chr1 (72-155)||(22826662-22826746)
chr1 (72-156)||(22827057-22827142)
chr1 (72-156)||(22840983-22841068)
chr1 (40-155)||(24284838-24284954)
chr1 (72-156)||(24272761-24272846)
chr1 (41-113)||(20260944-20261016)
chr1 (46-134)||(12458581-12458670)
[»] scaffold0065 (1 HSPs)
scaffold0065 (72-138)||(34727-34792)
[»] scaffold0007 (1 HSPs)
scaffold0007 (90-156)||(260213-260280)
[»] chr8 (2 HSPs)
chr8 (74-133)||(42001905-42001965)
chr8 (74-156)||(33897224-33897307)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 25550230 - 25550019
Alignment:
Q  19 aagaattatactataatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatactacacac 118  Q
    ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  25550230 aagaattctactataatcgataattacagatactgaatagtaaaggtaactccagctataggaaaatccactaactattagtccaagaaatactacacac 25550131  T
Q  119 aagacttttatttatatgaccaaatctttgcatatttcgtagctttaacttgtgaagaaggtaataaagaaagaaaggtacnnnnnnntgtgctttcata 218  Q
    |||||||||||||||||| |||||||||| |||||||| | |||||||||||||||||| |||||||| ||| ||||||||       ||||||||||||    
T  25550130 aagacttttatttatatggccaaatctttacatatttcttggctttaacttgtgaagaatgtaataaataaaaaaaggtacaaaaaaatgtgctttcata 25550031  T
Q  219 aacactaaaaat 230  Q
    ||||||||||||    
T  25550030 aacactaaaaat 25550019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 8761171 - 8761288
Alignment:
Q  41 attacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgacc 139  Q
    ||||||||||||||||| ||||| |||  | ||||||| |||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  8761171 attacagatactgaatagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgacc 8761270  T
Q  140 aaa-tctttgcatatttc 156  Q
    ||| | ||||||||||||    
T  8761271 aaagtatttgcatatttc 8761288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 10128584 - 10128515
Alignment:
Q  88 actaactattagtgcaagaaatacta-cacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttc 10128515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 37965516 - 37965596
Alignment:
Q  78 agcaaaatccactaactattagtgcaagaaatacta-cacacaa-gacttttatttatatgaccaaatctttgcatatttc 156  Q
    ||||||| ||| |||||||| ||||||||||||||| ||||||| |||||||||||||||  |||| ||||||||||||||    
T  37965516 agcaaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttc 37965596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 37965265 - 37965321
Alignment:
Q  28 actataatcgataattacagatactgaataatagaggtaactccagctatagcaaaa 84  Q
    |||||||||||||||||||||||||||||| ||||||||||   | |||||||||||    
T  37965265 actataatcgataattacagatactgaatagtagaggtaacgttacctatagcaaaa 37965321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 15140859 - 15140822
Alignment:
Q  119 aagacttttatttatatgaccaaatctttgcatatttc 156  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  15140859 aagacttttatttatatgaccaaatctttacatatttc 15140822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 53472528 - 53472655
Alignment:
Q  28 actataatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttt 126  Q
    |||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||| ||| ||||| |||||||| |||||||| |||||    
T  53472528 actataatcgataattacagatactgaatagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa-acttt 53472626  T
Q  127 tatttatatgaccaaatctttgcatatttc 156  Q
    ||||||||||  ||| ||||||||||||||    
T  53472627 tatttatatg-gcaagtctttgcatatttc 53472655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 53469652 - 53469768
Alignment:
Q  41 attacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttatttatatgacc 139  Q
    |||||||||||||||||||| |||||||    ||||||| |||||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||    
T  53469652 attacagatactgaataatataggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgacc 53469751  T
Q  140 aaatctttgcatatttc 156  Q
    || ||||||||||||||    
T  53469752 aagtctttgcatatttc 53469768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 10396106 - 10395977
Alignment:
Q  28 actataatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttt 126  Q
    ||||||||||||||| |||||||||||||| |||| | ||| ||| |||||||| || ||||||||||||  ||||||||||||| ||||||||| ||||    
T  10396106 actataatcgataatcacagatactgaatagtagaaggaacaccatctatagcataacccactaactattgatgcaagaaatactaacacacaaggcttt 10396007  T
Q  127 tatttatatgaccaaatctttgcatatttc 156  Q
    |||||||||| || | ||||||||||||||    
T  10396006 tatttatatggccgagtctttgcatatttc 10395977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 27272705 - 27272585
Alignment:
Q  38 ataattacagatactgaataatagaggtaactccagctatagcaaaatcc-actaactattagtgcaagaaatacta-cacacaagacttttatttatat 135  Q
    ||||||||| ||  |||||| |||| ||||  | ||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  27272705 ataattacaaattttgaatagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatat 27272606  T
Q  136 gaccaaatctttgcatatttc 156  Q
    ||||||| |||||||||||||    
T  27272605 gaccaaacctttgcatatttc 27272585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 50887389 - 50887513
Alignment:
Q  32 taatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaag-aaatactacacacaagacttttatt 130  Q
    |||| |||||||||| ||||| |||| |||||||||  | ||||||||||||| |||||||||||||||| ||| |||  | || |||||||| ||||||    
T  50887389 taattgataattacatatactaaatagtagaggtaatactagctatagcaaaacccactaactattagtgtaagcaaaaccaacgcacaagacatttatt 50887488  T
Q  131 tatatgaccaaatctttgcatattt 155  Q
    |||||| ||||  ||||||||||||    
T  50887489 tatatggccaagcctttgcatattt 50887513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 32015263 - 32015180
Alignment:
Q  71 cagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaaatctttgcatat 153  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||||||| || ||||||||| |  |||| |||||||||||    
T  32015263 cagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatat 32015180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 29235094 - 29235236
Alignment:
Q  19 aagaattatactataatcgataattacagata-----ctgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaat-act 112  Q
    ||||||| |||||| ||||||||||||| ||      ||||||| |||| ||||  ||| ||||||||||| |||| ||||||| ||||||||||| |||    
T  29235094 aagaattctactatgatcgataattacaaattatatgctgaatagtagatgtaataccaactatagcaaaa-ccacgaactattggtgcaagaaattact 29235192  T
Q  113 a-cacacaagacttttatttatatgaccaaatctttgcatattt 155  Q
    | |||||||| | |||||||||||| |||| |||||||||||||    
T  29235193 aacacacaaggcctttatttatatggccaagtctttgcatattt 29235236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 9010409 - 9010477
Alignment:
Q  41 attacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaat 109  Q
    |||||| |||||||||  |||||||||  ||| ||||| |||||||||||||||||| ||||| |||||    
T  9010409 attacaaatactgaattctagaggtaataccaactatatcaaaatccactaactattggtgcacgaaat 9010477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 13817042 - 13816957
Alignment:
Q  72 agctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||||| ||||||  ||||||||||| || ||||||||| || |||| |||   ||||||||||||||||| |||| |||||||||    
T  13817042 agctatcgcaaaactcactaactatttgtacaagaaataataacacataaggtctttatttatatgaccaagtcttcgcatatttc 13816957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 25889763 - 25889642
Alignment:
Q  32 taatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatt 130  Q
    |||| |||||||||| | ||| |||||||||||||   | ||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||    
T  25889763 taattgataattacaaagactaaataatagaggtactgctagctatagcaaaacccactaactattggtgcaagaaatactaacatacaagacttttatt 25889664  T
Q  131 tatatgaccaaatctttgcata 152  Q
    |||||||||||| |||||||||    
T  25889663 tatatgaccaaacctttgcata 25889642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 30046558 - 30046435
Alignment:
Q  32 taatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatt 130  Q
    |||||||||||| || ||| |||||| |||||||||| | ||||||||||||| | |||||||||| || ||||||||||| ||||||||  ||||||||    
T  30046558 taatcgataattgcatatattgaatagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaaagcttttatt 30046460  T
Q  131 tatatgaccaaatctttgcatattt 155  Q
    ||||||  ||| |||||||||||||    
T  30046459 tatatggtcaagtctttgcatattt 30046435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 31141543 - 31141418
Alignment:
Q  31 ataatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttat 129  Q
    |||||| || |||||| ||| |||||| |||||||||  |||  ||||||||| |  ||| |||||| ||| ||||||||||| ||| ||||||||||||    
T  31141543 ataatcaattattacaaatattgaatagtagaggtaataccaattatagcaaactt-acttactattggtgtaagaaatactaacacgcaagacttttat 31141445  T
Q  130 ttatatgaccaaatctttgcatatttc 156  Q
    ||||||| | |||||||||||||||||    
T  31141444 ttatatggctaaatctttgcatatttc 31141418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 37133804 - 37133885
Alignment:
Q  75 tatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaaatctttgcatattt 155  Q
    ||||||||||| |||||||||||  || |||||||||| | |||||||||||||||| ||| | | ||||||| | ||||||    
T  37133804 tatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatattt 37133885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 7961911 - 7961791
Alignment:
Q  37 gataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatat 135  Q
    |||||||||| ||  |||||| |||| ||||  | ||||||||||||| |||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  7961911 gataattacaaattttgaatagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatat 7961812  T
Q  136 gaccaaatctttgcatatttc 156  Q
    ||||||| |||||||||||||    
T  7961811 gaccaaacctttgcatatttc 7961791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 11270096 - 11269985
Alignment:
Q  32 taatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatt 130  Q
    |||| |||||||||| |||||||||| |||||||||| | || |||||||||| |||||||||||| ||||||  |||||| ||||||||| ||||||||    
T  11270096 taattgataattacaaatactgaatagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatt 11269997  T
Q  131 tatatgaccaaa 142  Q
    ||||||||||||    
T  11269996 tatatgaccaaa 11269985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 36208078 - 36207982
Alignment:
Q  37 gataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatactacacacaagacttttatttatatg 136  Q
    |||||||| ||||||| |||| ||||| |||| | ||||||||||||| |||||||||||| ||||||||||||||| ||||   |||||||||||||||    
T  36208078 gataattagagatactaaatagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatacta-acac---acttttatttatatg 36207983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 1716606 - 1716743
Alignment:
Q  19 aagaattatactataatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acaca 117  Q
    |||||||  |||||||||||| || | | |||||||||| |||||||||  |||||||||  ||||  |||||||||||  ||||||||||| | |||||    
T  1716606 aagaattccactataatcgattatcatatatactgaatagtagaggtaataccagctataaaaaaactcactaactattgatgcaagaaatattaacaca 1716705  T
Q  118 caagacttttatttatatgaccaaatctttgcatattt 155  Q
    |||||| ||||||||||||  ||| ||||| |||||||    
T  1716706 caagacctttatttatatggtcaagtctttacatattt 1716743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 38969375 - 38969423
Alignment:
Q  53 gaataatagaggtaactccagctatagcaaaatccactaactattagtg 101  Q
    ||||| |||||||||  |||| |||||||||| ||||||||||||||||    
T  38969375 gaatagtagaggtaataccagttatagcaaaaaccactaactattagtg 38969423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 13555994 - 13556120
Alignment:
Q  32 taatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatt 130  Q
    |||| |||||||||| ||  |||||| |||| ||||  | ||||||||||||| ||| |||||||| |||||||||||||| ||||||||| ||||||||    
T  13555994 taattgataattacaaattttgaatagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatt 13556093  T
Q  131 tatatgaccaaatctttgcatatttcg 157  Q
    |||||||||||  ||||||||||||||    
T  13556094 tatatgaccaagcctttgcatatttcg 13556120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 2921839 - 2921957
Alignment:
Q  39 taattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatga 137  Q
    |||||||| ||  |||||| |||| ||||  | ||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||||| |    
T  2921839 taattacaaattttgaatattagacgtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatatta 2921938  T
Q  138 ccaaatctttgcatatttc 156  Q
    |||| || |||||||||||    
T  2921939 ccaagtcattgcatatttc 2921957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 13558009 - 13558090
Alignment:
Q  76 atagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||  |||||||||||||||||||  |||||||||||||    
T  13558009 atagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttc 13558090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 16910083 - 16910209
Alignment:
Q  28 actataatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttt 126  Q
    |||||||||||||||||||||||||||||| || | || || | |||||||||||||  ||| ||||||| | |||| ||||||| |||||||| |||||    
T  16910083 actataatcgataattacagatactgaatagtaaatgt-acgctagctatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttt 16910181  T
Q  127 tatttatatgaccaaatctttgcatatt 154  Q
    ||||||||   |||| ||||||||||||    
T  16910182 tatttataatgccaagtctttgcatatt 16910209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 2923188 - 2923258
Alignment:
Q  72 agctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttatttatatgaccaa 141  Q
    ||||||| ||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  2923188 agctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaa 2923258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 11677240 - 11677136
Alignment:
Q  53 gaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttatttatatgaccaaatctttgcat 151  Q
    ||||| |||||||||  | |||||||| |||| || ||||||||| |||  |||||||||| ||||||||| |||||||||||||| |||  ||||||||    
T  11677240 gaatagtagaggtaatgctagctataggaaaacccgctaactattggtgttagaaatactaacacacaagagttttatttatatgatcaatcctttgcat 11677141  T
Q  152 atttc 156  Q
    |||||    
T  11677140 atttc 11677136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 11678966 - 11678854
Alignment:
Q  41 attacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttatttatatgacc 139  Q
    |||||| |||||||||| |||||||||  | | ||||||||||||||||||    || |||  |||||||||| ||||||||| ||||||||| ||||||    
T  11678966 attacaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----ttggtgttagaaatactaacacacaagagttttatttacatgacc 11678871  T
Q  140 aaatctttgcatatttc 156  Q
    ||  |||||||||||||    
T  11678870 aagcctttgcatatttc 11678854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 16403623 - 16403538
Alignment:
Q  71 cagctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||||||||||||||||||||| |||| ||||||  ||||  | ||||||||||||||||||||||||| || || |||||||||||    
T  16403623 cagctatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttc 16403538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 11681440 - 11681548
Alignment:
Q  28 actataatcgataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaat-acta-cacacaagactt 125  Q
    ||||||||| || |||||| |||||||||| || ||||||  || ||||||| |||| ||||||||||||  |||||||||| |||| ||||||| ||||    
T  11681440 actataatcaatgattacatatactgaatagtataggtaatacctgctatagtaaaa-ccactaactattgttgcaagaaattactaacacacaaaactt 11681538  T
Q  126 ttatttatat 135  Q
    ||||||||||    
T  11681539 ttatttatat 11681548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 14721838 - 14721723
Alignment:
Q  41 attacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatac-tacacacaagacttttatttatatgacc 139  Q
    ||||||||||| ||||| || ||||||   ||| |||| ||||| ||| ||||||||  |||||||||||| || | ||||| |||||||||||| | ||    
T  14721838 attacagataccgaatagtataggtaatatcagatataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttata-ggcc 14721740  T
Q  140 aaatctttgcatatttc 156  Q
    |||||||||||||||||    
T  14721739 aaatctttgcatatttc 14721723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 22880002 - 22880069
Alignment:
Q  75 tatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaa 141  Q
    |||||||||| ||||||| |||| |||||||||||| | |||||||| || |||||||||||||||||    
T  22880002 tatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgaccaa 22880069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 27340600 - 27340718
Alignment:
Q  37 gataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatactacacacaagacttttatttatatg 136  Q
    |||||||||| ||  |||||| |||| ||||  | || |||||||||| |||||||||||| || ||||| |||||| |||||    |||||||||||||    
T  27340600 gataattacaaattttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatacta-acacacagtttttatttatatg 27340698  T
Q  137 accaaatctttgcatatttc 156  Q
    |||||  |||||||||||||    
T  27340699 accaagcctttgcatatttc 27340718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 27401340 - 27401458
Alignment:
Q  37 gataattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatactacacacaagacttttatttatatg 136  Q
    |||||||||| ||  |||||| |||| ||||  | || |||||||||| |||||||||||| || ||||| |||||| |||||    |||||||||||||    
T  27401340 gataattacaaattttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatacta-acacacagtttttatttatatg 27401438  T
Q  137 accaaatctttgcatatttc 156  Q
    |||||  |||||||||||||    
T  27401439 accaagcctttgcatatttc 27401458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 22898117 - 22898184
Alignment:
Q  75 tatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaa 141  Q
    |||||||||| ||||||| |||| |||||||||||| | ||||| || || |||||||||||||||||    
T  22898117 tatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgaccaa 22898184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 19670793 - 19670684
Alignment:
Q  48 atactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaaatctt 146  Q
    |||||||||| |||||||||| | ||||||||||||| |||||||||||| || |||| |||||| ||||||||| |||||||||||||||| ||  |||    
T  19670793 atactgaatagtagaggtaacgctagctatagcaaaacccactaactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctt 19670694  T
Q  147 tgcatatttc 156  Q
    ||||||||||    
T  19670693 tgcatatttc 19670684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 32795563 - 32795645
Alignment:
Q  75 tatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||||||||| |||||||||||| || |||| |||||| |||| ||||||||||||| ||||||| || ||||||||||||||    
T  32795563 tatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatatttc 32795645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 26896679 - 26896594
Alignment:
Q  72 agctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||||||||||||  || ||||||||| ||||||||||||| ||||||||    |||||||||||| |||| ||||||||||||||    
T  26896679 agctatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttc 26896594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 32796346 - 32796409
Alignment:
Q  94 tattagtgcaagaaatacta-cacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||| ||||||| ||||||| |||||||| |||||||||||||||| ||  |||||||||||||    
T  32796346 tatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttc 32796409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 22826662 - 22826746
Alignment:
Q  72 agctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaaatctttgcatattt 155  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||  ||||||| ||||    
T  22826662 agctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagattt 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 22827057 - 22827142
Alignment:
Q  72 agctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    ||||||| ||||| |||||||||||| ||||||||||||  | |||||||| |||||||||||||||||||| |||||||||||||    
T  22827057 agctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatttc 22827142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 22841068 - 22840983
Alignment:
Q  72 agctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||||||| |||| |||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||  |||||||||||||    
T  22841068 agctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatttc 22840983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 24284954 - 24284838
Alignment:
Q  40 aattacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgac 138  Q
    ||||||||||||| |||| ||||| |||  |||||||||| || ||||||| |||||| |||||||||||| | ||||||||  | |||||||||||  |    
T  24284954 aattacagatactaaatagtagagctaataccagctatagtaacatccactgactattggtgcaagaaatattaacacacaatgcctttatttatatagc 24284855  T
Q  139 caaatctttgcatattt 155  Q
    ||||| |||||||||||    
T  24284854 caaatatttgcatattt 24284838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 24272846 - 24272761
Alignment:
Q  72 agctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||||||| ||||  ||||||||||| |||||||||||||| ||||||||| | ||||| |||||   ||| ||||||||||||||    
T  24272846 agctatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttc 24272761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 20260944 - 20261016
Alignment:
Q  41 attacagatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatacta 113  Q
    |||||| |||||||||| |||||||||| | || ||||||||||| || || |||||  ||||||||||||||    
T  20260944 attacatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattgatgcaagaaatacta 20261016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 12458670 - 12458581
Alignment:
Q  46 agatactgaataatagaggtaactccagctatagcaaaatccactaactattagtgcaagaaatact-acacacaagacttttatttata 134  Q
    ||||| |||||| |||||||||  |||||| |||||||  | |||||||||| || ||||||||||| |||||||||   ||||||||||    
T  12458670 agatattgaatagtagaggtaataccagctctagcaaatcctactaactattggtacaagaaatactaacacacaaggtctttatttata 12458581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 34792 - 34727
Alignment:
Q  72 agctatagcaaaatccactaactattagtgcaagaaatactacacacaagacttttatttatatgac 138  Q
    ||||||||||||| |||||||||||| |||| |  ||||||| ||||||||||||||||||||||||    
T  34792 agctatagcaaaacccactaactattggtgctaataatacta-acacaagacttttatttatatgac 34727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 260213 - 260280
Alignment:
Q  90 taactattagtgcaagaaatacta-cacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    |||||||| ||||||||||||||| ||||||||  |||||||||| |||| || ||||||||||||||    
T  260213 taactattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttc 260280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 42001965 - 42001905
Alignment:
Q  74 ctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttatttat 133  Q
    ||||||||||| | |||||||||| ||||||| | ||||| ||||||||||||||||||||    
T  42001965 ctatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatttat 42001905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 33897307 - 33897224
Alignment:
Q  74 ctatagcaaaatccactaactattagtgcaagaaatacta-cacacaagacttttatttatatgaccaaatctttgcatatttc 156  Q
    ||||| ||||| | ||||| |||| ||| || |||||||| ||||||||||||||||||||||   ||||||||| ||||||||    
T  33897307 ctataacaaaacctactaattattggtgtaaaaaatactaacacacaagacttttatttatattgtcaaatctttacatatttc 33897224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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