View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14782_low_12 (Length: 245)
Name: NF14782_low_12
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 33995950 - 33995724
Alignment:
| Q |
3 |
attattctagtcaacatatttaactgtcttactctcctacctaccattgctacttgctacattgtattcaacttgtttccaaattctaccccacttatat |
102 |
Q |
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| T |
33995950 |
attattctagtcaacatatttaactgtcttactctcctacccaacattgctacttgctacattgtattcaacttgtttccaaattctaccccacttatat |
33995851 |
T |
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| Q |
103 |
gaagactaattaaaagttaatttggccattctacaccaccatgtatattccatgccgtaactctttaatttcctgtcacacgaacctctatataaacccg |
202 |
Q |
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| T |
33995850 |
gaagactaattaaaagttaatttggccattctacaccaccatgtatattccatgccgtaactctttaatttcctgtcacacgaacctctatataaacccg |
33995751 |
T |
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| Q |
203 |
ttttataactccaaccaaagcataaca |
229 |
Q |
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||||||||||||||||||||||||||| |
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| T |
33995750 |
ttttataactccaaccaaagcataaca |
33995724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 34008499 - 34008340
Alignment:
| Q |
70 |
tcaacttgtttccaaattctacccc-acttatatgaagactaattaaaagttaatttggccattctacaccaccatgtatattccatgccgtaactcttt |
168 |
Q |
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||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| || |||||||||||||||| ||| | |||||| |||| |||| |
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| T |
34008499 |
tcaacttatttccaaattctacccccacttatatcaagactaattcaaagttaattcggtcattctacaccaccatttatgcttcatgcc-taacgcttt |
34008401 |
T |
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| Q |
169 |
aatttcctgtcacacgaacctctatataaacccgttttataactccaaccaaagcataaca |
229 |
Q |
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||||| || ||| | |||||||||||||| || |||||| ||||||||| ||||||| |
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| T |
34008400 |
aattttcttccacgagctcctctatataaacctcttctataacaccaaccaaatcataaca |
34008340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 34000643 - 34000551
Alignment:
| Q |
67 |
tattcaacttgtttccaaattctacccc-acttatatgaagactaattaaaagttaatttggccattctacaccaccatgtatattccatgcc |
158 |
Q |
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||||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||| ||| ||||||||||| |||||| |||||| |
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| T |
34000643 |
tattcaacttgttcccaaattctacccccacttatataaagactaattaaaagtcaatttggtcatcctacaccaccacatatatttcatgcc |
34000551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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