View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14782_low_13 (Length: 244)
Name: NF14782_low_13
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_low_13 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 3575647 - 3575886
Alignment:
| Q |
4 |
ataatacttataataagcacatatttaatattttctttctttttctgaaaaacaagaatatatatattatcatcttgtctaatgtaataagcacatattt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | | |||||||||||||||||||||||| |
|
|
| T |
3575647 |
ataatacttataataagcacatatttaatattttctttctttttctgaaaaacaagaatatat-tatcatcttgtcgtctaatgtaataagcacatattt |
3575745 |
T |
|
| Q |
104 |
tataggaagaaggatgggttgtgtgtaaagtgttcaagaaacgaatagctacaacaatgaggaaaatggacgattcaccatgttggtatgatgatcaagt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575746 |
tataggaagaaggatgggttgtgtgtaaagtgttcaagaaacgaatagctacaacaatgaggaaaatggacgattcaccatgttggtatgatgatcaagt |
3575845 |
T |
|
| Q |
204 |
atcattcatgcaatcagagcttgaatccccaagcagaattt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575846 |
atcattcatgcaatcagagcttgaatccccaagcagaattt |
3575886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University