View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14782_low_14 (Length: 238)
Name: NF14782_low_14
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_low_14 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4881812 - 4881592
Alignment:
| Q |
1 |
ttaagataaaagaagaaaggtgtcgtgagctaaactcagttgttagaaacattgtataatatatgtaggggtcaggtttcgaagcatgaattctcttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || |
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| T |
4881812 |
ttaagataaaagaagaaaggtgtcgtgagctaaactcagttgttagaaacattgtataatatatataggggtcgggtttcgaagcatgaattctccgttt |
4881713 |
T |
|
| Q |
101 |
attcactttaagagatgaattttggcaaattagactacttgacccaaacaaaaagataaaagaaggaaagagtattaactgcactctcatggccggtcat |
200 |
Q |
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| T |
4881712 |
attcattttaagagatgaattttggaaaattagactacttgacccaaacaaaaagataaaagaaggaaagagtattaactgcactctcatggccggtcat |
4881613 |
T |
|
| Q |
201 |
aattccttttttggttacatg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4881612 |
aattccttttttggttacatg |
4881592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 30676372 - 30676313
Alignment:
| Q |
24 |
cgtgagctaaactcagttgttagaaacattgtataatatatgtaggggtcaggtttcgaa |
83 |
Q |
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| T |
30676372 |
cgtgaacttaactcagttggtagagacattgtataatttatgtagaggtcagggttcgaa |
30676313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 9639996 - 9640040
Alignment:
| Q |
23 |
tcgtgagctaaactcagttgttagaaacattgtataatatatgta |
67 |
Q |
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| T |
9639996 |
tcgtgagcttaactcagttgttagaaacaacgaataatatatgta |
9640040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 16355511 - 16355555
Alignment:
| Q |
23 |
tcgtgagctaaactcagttgttagaaacattgtataatatatgta |
67 |
Q |
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| T |
16355511 |
tcgtgagcttaactcagttggtagagacattgtataatatatgta |
16355555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 23171009 - 23171053
Alignment:
| Q |
23 |
tcgtgagctaaactcagttgttagaaacattgtataatatatgta |
67 |
Q |
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||||||||| |||||||||||||| |||| ||||||||||||||| |
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| T |
23171009 |
tcgtgagcttaactcagttgttaggaacaatgtataatatatgta |
23171053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 52936641 - 52936683
Alignment:
| Q |
25 |
gtgagctaaactcagttgttagaaacattgtataatatatgta |
67 |
Q |
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||||||| |||||||||| |||||||| ||||||||||||||| |
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| T |
52936641 |
gtgagcttaactcagttgatagaaacaatgtataatatatgta |
52936683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 19594234 - 19594294
Alignment:
| Q |
23 |
tcgtgagctaaactcagttgttagaaacattgtataatatatgtaggggtcaggtttcgaa |
83 |
Q |
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||||||||| |||||||||| |||| | |||| ||| |||||||||||| |||| |||||| |
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| T |
19594234 |
tcgtgagcttaactcagttgatagagatattgcatattatatgtaggggccagggttcgaa |
19594294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 122557 - 122597
Alignment:
| Q |
33 |
aactcagttgttagaaacattgtataatatatgtaggggtc |
73 |
Q |
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| T |
122557 |
aacttagttggtaggaacattgtataatatatgtaggggtc |
122597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 21356867 - 21356911
Alignment:
| Q |
25 |
gtgagctaaactcagttgttagaaacattgtataatatatgtagg |
69 |
Q |
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||||||| |||||||||| |||| | ||||||||||||||||||| |
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| T |
21356867 |
gtgagcttaactcagttgatagatatattgtataatatatgtagg |
21356911 |
T |
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