View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14782_low_15 (Length: 235)
Name: NF14782_low_15
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8187725 - 8187947
Alignment:
| Q |
1 |
gtgagttttatatgtcctactaactttagtgtggatatgcatgtgattttaagagaacaagaggtggtgtttttgattaatattttttgtttcttgttga |
100 |
Q |
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| T |
8187725 |
gtgagttttatatgtcctactaactttagtgtggatatgcatgtgattttaagagaacaagaggtggtgtttttgattaatattttttgtttcttgttga |
8187824 |
T |
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| Q |
101 |
ttctgcttttggtgacttgattcttgattattagagtctctcatttatgcta-ttttgttgccattcataaactcattttggaggtttccataatatgtt |
199 |
Q |
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| T |
8187825 |
ttctgcttttggtgacttgattcttgattattagagtctctcatttatgctacttttgttgccattcataaattcattttggaggattccataatatgtt |
8187924 |
T |
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| Q |
200 |
tcattaacttgattgttgaaatt |
222 |
Q |
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| T |
8187925 |
ccattaacttgattattgaaatt |
8187947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 8184502 - 8184557
Alignment:
| Q |
97 |
ttgattctgcttttggtgacttgattcttgattattagagtctctcatttatgcta |
152 |
Q |
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| T |
8184502 |
ttgattctacttttggtgacttgattcttgattatgagagtctctcatttatgcta |
8184557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 516762 - 516844
Alignment:
| Q |
74 |
tgattaatattttttgtttcttgttgattctgcttttggtgacttgattcttgattattagagtctctcatttatgctatttt |
156 |
Q |
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| T |
516762 |
tgattaatctttgttgttgcttgttgattctgcttggggcaacttgattctggattgttgaggtctctcatttatgctatttt |
516844 |
T |
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