View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14782_low_16 (Length: 234)
Name: NF14782_low_16
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_low_16 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 41450541 - 41450774
Alignment:
| Q |
1 |
atgaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagtt |
100 |
Q |
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| T |
41450541 |
atgaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagtt |
41450640 |
T |
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| Q |
101 |
ggccttgcagttcgcctttatcatctgctttacccttttgctcatctttgtttgcctcttttacttcttgttctgatgtacttatttcattacatgcttt |
200 |
Q |
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| T |
41450641 |
ggccttgcggttcgcctttatcatctgctttaccattttgctcatctttgtttgcctcttttacttcttgttctgatgtacttatttcattacatgcttt |
41450740 |
T |
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| Q |
201 |
tcctccatccaatgattcaagtgtagacaaagcc |
234 |
Q |
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| T |
41450741 |
tcctccatccaatgattcaagtgtagacaaagcc |
41450774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 41437315 - 41437547
Alignment:
| Q |
1 |
atgaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagtt |
100 |
Q |
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| T |
41437315 |
atgaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagtt |
41437414 |
T |
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| Q |
101 |
ggccttgcagttcgcctttatcatctgctttacccttttgctcatctttgtttgcctcttttacttcttgttctgatgtacttatttcattacatgcttt |
200 |
Q |
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| T |
41437415 |
ggccttgcggttcgcctttatcatctgctttaccattttgctcatctttgtttgcctcttttaatttttgttttgatgtacttatttcattatatgcttt |
41437514 |
T |
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| Q |
201 |
tcctccatccaatgattcaagtgtagacaaagc |
233 |
Q |
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| T |
41437515 |
tcctccatccaatgattcaattgtggacaaagc |
41437547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 14239466 - 14239716
Alignment:
| Q |
1 |
atgaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagtt |
100 |
Q |
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||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14239466 |
atgaatggtacaagaactcccccatatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacgagtt |
14239565 |
T |
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| Q |
101 |
ggccttgcagttcgcctttatcatctgctttacccttttgctcatctttgtttgcctct------------------tttacttcttgttctgatgtact |
182 |
Q |
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| T |
14239566 |
ggccttgtggttcgcctttatcacctgatttaccattttgctcatctttgtttgcctcttcatgtgtgccagagatattttcttcttgttctaatgtact |
14239665 |
T |
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| Q |
183 |
tatttcattacatgcttttcctccatccaatgattcaagtgtagacaaagc |
233 |
Q |
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| T |
14239666 |
tatttcattagatgtttttccttcatccaatgattcaagtgtggacaaagc |
14239716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 14373883 - 14373633
Alignment:
| Q |
1 |
atgaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagtt |
100 |
Q |
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||||| ||||| | |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
14373883 |
atgaatggtacgacagatcctccatatgcagttgtgatatacttccaatacaccgaaaacccaactttacctttctccctttcttcttcttgaacaagtt |
14373784 |
T |
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| Q |
101 |
ggccttgcagttcgcctttatcatctgctttacccttttgctcatctttgtttgcctctt------------------ttacttcttgttctgatgtact |
182 |
Q |
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| T |
14373783 |
ggtttttcggttcgctattatcatctgctttaccattttgcacatctttggttgcctcttcatgagtgccagagatacttacttcttgttcgaatgtact |
14373684 |
T |
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| Q |
183 |
tatttcattacatgcttttcctccatccaatgattcaagtgtagacaaagc |
233 |
Q |
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| T |
14373683 |
tatctcattagatgtttttcctccatccaatgattcaagtgcagacaaagc |
14373633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 22749479 - 22749575
Alignment:
| Q |
10 |
acaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagttggcctt |
106 |
Q |
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||||||| ||||||||||| || || ||||| ||||| || || ||||| ||||||||||||| ||| ||||||||||||||||| ||||| |||| |
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| T |
22749479 |
acaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctctttcttcttcttgaacaagttgtcctt |
22749575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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