View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14782_low_3 (Length: 489)
Name: NF14782_low_3
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 5 - 479
Target Start/End: Complemental strand, 36540662 - 36540188
Alignment:
| Q |
5 |
gtgagatgaaatgaaatttaaatggttatctttacctttgtattccaaacattgaaatctgacgaaaagcaaattcaagaggaaaatgtaatcaactatc |
104 |
Q |
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| T |
36540662 |
gtgaaatgaaatgaaatttaaatggttatctttacctttgtattccaaacattgaaatctaacgaaaagcaaattcaagaggaaaatgtaatcaaccatc |
36540563 |
T |
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| Q |
105 |
tatatataattaannnnnnnaaaacaatctatatataataattaattaaatagcaacatgaaatagaatagcacaaatacatgttaatttgtatctttct |
204 |
Q |
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| T |
36540562 |
tatatataattaatttttttaaaacaatctatatataataattaattaaatagcaacatgaaatagaatagcacaaatacatgttaatttgtatctttct |
36540463 |
T |
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| Q |
205 |
aattatttatacatggtgtgcatcatcatcttgctagctgcttgtttttctggtattttgtttgttgttaaggaaatcaagcaagacagtactcttacac |
304 |
Q |
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| T |
36540462 |
gattatttatacatggtgtgcatcatcatcttgctagctgcttgtttttctggtattttgtttgttgttaaggaaatcaagcaagacagtactcttacac |
36540363 |
T |
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| Q |
305 |
ttaggacattttggattgggatcagcctcggataacaaaacatacatgtgacattgaagacaacctaggagaaccatagcacttgtctcttcctcagcct |
404 |
Q |
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| T |
36540362 |
ttagggcattttggattgggatcagcctcggataacaaaacatacatgtgacattgaagacaacctaggagaaccatagcacttgtctcttcttcagcct |
36540263 |
T |
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| Q |
405 |
cagaagacacacatgataagtctgtactacaaactgatgaagtagtcgaaaactcggaagacatagctgatgatg |
479 |
Q |
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| T |
36540262 |
cagaagacacacatgataagtccgtactacaaactgatgaagtagtcgaaaactcggaagacatagctgacgatg |
36540188 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 18904069 - 18904119
Alignment:
| Q |
270 |
tgttaaggaaatcaagcaagacagtactcttacacttaggacattttggat |
320 |
Q |
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| T |
18904069 |
tgttaagaaaatcaagcaacacagtactcttgcacttgggacatttgggat |
18904119 |
T |
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