View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14782_low_6 (Length: 344)

Name: NF14782_low_6
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14782_low_6
NF14782_low_6
[»] chr7 (1 HSPs)
chr7 (47-320)||(40739494-40739767)
[»] chr2 (2 HSPs)
chr2 (47-326)||(3603837-3604119)
chr2 (222-300)||(6958871-6958952)
[»] chr1 (2 HSPs)
chr1 (47-326)||(6241557-6241836)
chr1 (242-303)||(17245399-17245460)
[»] chr6 (2 HSPs)
chr6 (47-320)||(29466708-29466981)
chr6 (225-287)||(19691438-19691500)
[»] chr3 (1 HSPs)
chr3 (257-300)||(54354091-54354134)
[»] chr5 (1 HSPs)
chr5 (257-300)||(39350306-39350349)
[»] scaffold0141 (2 HSPs)
scaffold0141 (257-291)||(31463-31497)
scaffold0141 (257-291)||(34935-34969)
[»] scaffold0049 (2 HSPs)
scaffold0049 (257-291)||(79843-79877)
scaffold0049 (257-291)||(83315-83349)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 47 - 320
Target Start/End: Original strand, 40739494 - 40739767
Alignment:
Q  47 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgtttg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40739494 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgtttg 40739593  T
Q  147 ttgctggatttcattgagggaaacaacactcaatgttcctatgatgaaggtttggatttatgaagatttctgcagaattttaactcaatgttatgtgttg 246  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  40739594 ttgctggatttcattgagggaaacaacgctcaatgttcctacgatgaaggtttggatttatgaagatttatgcataattttaactcaatgttttgtgttg 40739693  T
Q  247 ttgttagaatatttatgggtatgatgatattaggtgttgttgttaatggtagtgatgagaggatgaagatgatg 320  Q
    ||||||||| |||||||||||||||||||||| |||||  |||||| ||||||||||||||| |||||||||||    
T  40739694 ttgttagaagatttatgggtatgatgatattatgtgtttctgttaaaggtagtgatgagagggtgaagatgatg 40739767  T

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Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 47 - 326
Target Start/End: Complemental strand, 3604119 - 3603837
Alignment:
Q  47 ttgattcatggattcaattgttgttgttgttg---attcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgt 143  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3604119 ttgattcatggattcaattgttgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgt 3604020  T
Q  144 ttgttgctggatttcattgagggaaacaacactcaatgttcctatgatgaaggtttggatttatgaagatttctgcagaattttaactcaatgttatgtg 243  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3604019 ttgttgctggattttattgagggaaacaactctcaatgttcctacgatgaaggtttggatttatgaagatttatgcagaattttaactcaatgttatgtg 3603920  T
Q  244 ttgttgttagaatatttatgggtatgatgatattaggtgttgttgttaatggtagtgatgagaggatgaagatgatggtgatg 326  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||| |||||    
T  3603919 ttgttgttagaagatttatgggtatgatgatattaggtgttgtttttaaaggtagtgatgagagagtgaagatgatgatgatg 3603837  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 6958952 - 6958871
Alignment:
Q  222 aattttaactcaatgttatgtgttgtt---gttagaatatttatgggtatgatgatattaggtgttgttgttaatggtagtg 300  Q
    |||||||| ||||| ||||||||||||   ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  6958952 aattttaattcaatcttatgtgttgttattgtttgaagatttatgggtatgatgatattaggttttgttgttaatggtagtg 6958871  T

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Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 47 - 326
Target Start/End: Complemental strand, 6241836 - 6241557
Alignment:
Q  47 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgtttg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6241836 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgtttg 6241737  T
Q  147 ttgctggatttcattgagggaaacaacactcaatgttcctatgatgaaggtttggatttatgaagatttctgcagaattttaactcaatgttatgtgttg 246  Q
    ||||||||||| ||||||||||||||  |||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6241736 ttgctggattttattgagggaaacaattctcaatgttcctactgtgaaggtttggatttatgaagatttatgcagaattttaactcaatgttatgtgttg 6241637  T
Q  247 ttgttagaatatttatgggtatgatgatattaggtgttgttgttaatggtagtgatgagaggatgaagatgatggtgatg 326  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||||||||||| |||||    
T  6241636 ttgttagaagatttatgggtatgatgatattaggtgttgttcttaaatgtagtgatgagagggtgaagatgatgatgatg 6241557  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 17245399 - 17245460
Alignment:
Q  242 tgttgttgttagaatatttatgggtatgatgatattaggtgttgttgttaatggtagtgatg 303  Q
    |||||||| | ||| ||||||| || ||||||||||||||||||||||| ||| ||||||||    
T  17245399 tgttgttggttgaagatttatgtgtgtgatgatattaggtgttgttgtttatgatagtgatg 17245460  T

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Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 47 - 320
Target Start/End: Original strand, 29466708 - 29466981
Alignment:
Q  47 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgtttg 146  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29466708 ttgattcatagattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgtttg 29466807  T
Q  147 ttgctggatttcattgagggaaacaacactcaatgtt-cctatgatgaaggtttggatttatgaagatttctgcagaattttaactcaatgttatgtgtt 245  Q
    ||||||||||||||||||||||||||| ||||||||| || | || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  29466808 ttgctggatttcattgagggaaacaactctcaatgttcccgacgaggaaggtttgaatttatgaagatttatgcagaattttaactcaatgttatgtgtt 29466907  T
Q  246 gttgttagaatatttatgggtatgatgatattaggtgttgttgttaatggtagtgatgagaggatgaagatgatg 320  Q
    | |||||||| ||||||| |||||||||||||| ||||||||||||| ||| ||||||||||| | |||||||||    
T  29466908 g-tgttagaagatttatgagtatgatgatattaagtgttgttgttaaaggtggtgatgagagggtaaagatgatg 29466981  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 19691500 - 19691438
Alignment:
Q  225 tttaactcaatgttatgtgttgttgttagaatatttatgggtatgatgatattaggtgttgtt 287  Q
    ||||| ||||| ||||||||||||||| |   |||| || |||||||||||||||||||||||    
T  19691500 tttaattcaatcttatgtgttgttgtttggtgatttttgagtatgatgatattaggtgttgtt 19691438  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 54354091 - 54354134
Alignment:
Q  257 atttatgggtatgatgatattaggtgttgttgttaatggtagtg 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  54354091 atttatgggtatgatgatattaggtgttgttgttagtggtagtg 54354134  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 39350306 - 39350349
Alignment:
Q  257 atttatgggtatgatgatattaggtgttgttgttaatggtagtg 300  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  39350306 atttatgggtatgatgatattaagtgttgttgttagtggtagtg 39350349  T

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Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 31497 - 31463
Alignment:
Q  257 atttatgggtatgatgatattaggtgttgttgtta 291  Q
    |||||||||||||||||||||||||||||||||||    
T  31497 atttatgggtatgatgatattaggtgttgttgtta 31463  T

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Target: scaffold0141; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 34935 - 34969
Alignment:
Q  257 atttatgggtatgatgatattaggtgttgttgtta 291  Q
    |||||||||||||||||||||||||||||||||||    
T  34935 atttatgggtatgatgatattaggtgttgttgtta 34969  T

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Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 79877 - 79843
Alignment:
Q  257 atttatgggtatgatgatattaggtgttgttgtta 291  Q
    |||||||||||||||||||||||||||||||||||    
T  79877 atttatgggtatgatgatattaggtgttgttgtta 79843  T

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Target: scaffold0049; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 83315 - 83349
Alignment:
Q  257 atttatgggtatgatgatattaggtgttgttgtta 291  Q
    |||||||||||||||||||||||||||||||||||    
T  83315 atttatgggtatgatgatattaggtgttgttgtta 83349  T

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