View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14782_low_8 (Length: 298)
Name: NF14782_low_8
Description: NF14782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14782_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 164 - 298
Target Start/End: Original strand, 42091679 - 42091812
Alignment:
| Q |
164 |
aatgtgccctattggggtatcgttaacaagtgtcaatccgtgaggcatacataatttgagagtaatttgcccctattgacaagtagtactcgattttgga |
263 |
Q |
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| T |
42091679 |
aatgtgccctattggg-tatcgttaacaagtgtcaatccgtgaggcatacataatttgagagtagttttcccctattgacaagtagtactcgattttgga |
42091777 |
T |
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| Q |
264 |
gtgaaagatattgaaatcacatgttaaatgaaaga |
298 |
Q |
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| T |
42091778 |
gtgaaagatattgaaatcacatgttaaatgaaaga |
42091812 |
T |
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Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 42091562 - 42091665
Alignment:
| Q |
9 |
gtgagaagaatcaaagctaatggagaaaacattggcaatgcatagcataggaatcatatgtgatatcagcaacaaaactttaaatacagacagtcacaat |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42091562 |
gtgaaaagaatcaaagctaatggagaaaacattggcaatgcatagcataggaatcatatgtgatatcagcaacaaaactttaaatacagacggtcacaat |
42091661 |
T |
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| Q |
109 |
ctat |
112 |
Q |
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|||| |
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| T |
42091662 |
ctat |
42091665 |
T |
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