View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14783_high_11 (Length: 254)
Name: NF14783_high_11
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14783_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 5230747 - 5230977
Alignment:
| Q |
8 |
tcatgctcattcaaatgctaccattaatttaaagctataaatatttcatttgggatcatatgtttaatttttatcttacctattctataggtacactgat |
107 |
Q |
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| T |
5230747 |
tcatgctcattcaaatgctaccattaatttaaagctataaatatttcatttgggatcatatgtttaatttttatgttacctattctgtaggtacactgat |
5230846 |
T |
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| Q |
108 |
ttcggtggtgctatatctcatagaccaactgaagacttggcatactcagttgctagattcatacaaaatcgtggctcctttgttaactactatatggtat |
207 |
Q |
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| T |
5230847 |
ttcggtggtgctatatctcatagaccaactgaagacttggcatactcagttgctagattcatacaaaatcgtggctcctttgttaactactatatggtat |
5230946 |
T |
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| Q |
208 |
atgaatatgatgacttaattacatttgatta |
238 |
Q |
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| T |
5230947 |
atgaatatgatgacttaattaaatttgatta |
5230977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 17126418 - 17126529
Alignment:
| Q |
96 |
aggtacactgatttcggtggtgctatatctcatagaccaactgaagacttggcatactcagttgctagattcatacaaaatcgtggctcctttgttaact |
195 |
Q |
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|||||||||||||| ||| |||| | || |||||||| | ||||||||||||| ||| ||||| |||||| |||| ||||| ||||| | |||||||| |
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| T |
17126418 |
aggtacactgattttggtactgctgtcccttatagaccagcagaagacttggcattctcggttgccagattcgtacagaatcgcggctcatatgttaact |
17126517 |
T |
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| Q |
196 |
actatatggtat |
207 |
Q |
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| T |
17126518 |
actatatggtat |
17126529 |
T |
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