View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14783_high_3 (Length: 555)
Name: NF14783_high_3
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14783_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 41079949 - 41079410
Alignment:
| Q |
1 |
tccaccaaaagacgaatcgttcaaaagaacaaaatttgattcctgcgttgaacagttcttggtcagactttacttacatcatggctaaccggagggttaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41079949 |
tccatcaaaagacgaatcgttcaaaagaacaaaatttgattcctgcgtggaacagttcttggtcagactttacttacatcatggctaaccggagagttaa |
41079850 |
T |
|
| Q |
101 |
cacaaagttaaataagaaacaaactaacaaatcctaaaaatactctaacaaaatattcaaatttaaattttaatgatacctttaaagatttaatttatat |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
41079849 |
cacaaaattaaataagaaacaaactaacaaatcctaaaaatactctaacaaaatattcaaatttaaatcttaatgatacctttaaggatttaatttatat |
41079750 |
T |
|
| Q |
201 |
acaccgaccatgtgaaacgtttttacacatacatctaaacaaatcactttatgatgccacctttttgggttagttcctaaaaatgattttattggatgca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41079749 |
acaccgaccatgtgaaacgtttttacacatacatctaaacaaatcactttatgatgccaccaatttgggttagttcctaaaaatgattttattggatgca |
41079650 |
T |
|
| Q |
301 |
aaaaatttacaccatcacttcataattaattctatctataatgctatcttattttatatctaaacctaaacctaaaaaacgatatctaggcataatattc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41079649 |
caaaatttacaccatcacttcataattaattctatctataatgctatcttattttatatctaaacctaaacctaaaaaacgatatctaggcataatattc |
41079550 |
T |
|
| Q |
401 |
tcaacacttg-ttgcaaccaagtgattacatgaaatgtatcaatcatcattttctctcgtgttcccaattcatagtattgatagaatagaatgaacaaca |
499 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41079549 |
tcaacacttgtttgcaaccaagtgattacatgaaatgtatcaatcatcattttctctcgtgttcccaattcatagtatttatagaatagaatgaacaaca |
41079450 |
T |
|
| Q |
500 |
tacgaaacaacctacctggatgatgtcttcaaactggaac |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41079449 |
tacgaaacaacctacctggatgatgtcttcaaactggaac |
41079410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 257
Target Start/End: Complemental strand, 41101432 - 41101307
Alignment:
| Q |
131 |
atcctaaaaatactctaacaaaatattcaaatttaaattttaatgatacctttaaagatttaatttatatacaccgaccatgtgaaacgtttttacacat |
230 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||||||||| ||||||||| ||||| ||||||||| ||||||| ||| |||||||| |||||||||| |
|
|
| T |
41101432 |
atcctataaatacactaacaaa-tattcaaatttaaatcttaatgatatctttagggatttaattcatatacattgacggtgtgaaacatttttacacaa |
41101334 |
T |
|
| Q |
231 |
acatctaaacaaatcactttatgatgc |
257 |
Q |
| |
|
||||||| ||||| || |||||||| |
|
|
| T |
41101333 |
gcatctaatcaaatgacagtatgatgc |
41101307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 15596399 - 15596460
Alignment:
| Q |
221 |
ttttacacatacatctaaacaaatcactttatgatgccacctttttgggttagttcctaaaa |
282 |
Q |
| |
|
|||||||||| |||| || || ||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
15596399 |
ttttacacatgcatccaatcacatcactttatgatgccagctttttaggttagttcctaaaa |
15596460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 41090991 - 41090959
Alignment:
| Q |
270 |
ttagttcctaaaaatgattttattggatgcaaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41090991 |
ttagttcctaaaaatgattttattggatgcaaa |
41090959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 41101272 - 41101200
Alignment:
| Q |
331 |
tctatctataatgctatcttattttatatctaaacctaaacctaaaaaacgatatctaggcataatattctca |
403 |
Q |
| |
|
||||||||||| | ||| ||| | || ||||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
41101272 |
tctatctataacgatattttactataaatctaaacctaaatcttaaaaacgatatttaggcttaatattctca |
41101200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 41091119 - 41091088
Alignment:
| Q |
121 |
aaactaacaaatcctaaaaatactctaacaaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41091119 |
aaactaacaaatcctaaaaatactctaacaaa |
41091088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 453
Target Start/End: Complemental strand, 41101171 - 41101136
Alignment:
| Q |
418 |
caagtgattacatgaaatgtatcaatcatcattttc |
453 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41101171 |
caagtgattacatgaaatggatcaatcatcattttc |
41101136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 33914122 - 33914028
Alignment:
| Q |
187 |
gatttaatttatatacaccgaccatgtgaaacgtttttacacatacatctaaacaaatcactttatgatgccacctttttgggttagttcctaaa |
281 |
Q |
| |
|
|||||||||| ||||||| ||| |||||| ||||| ||||| |||| || |||||||||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
33914122 |
gatttaatttctatacacggacatcgtgaaatatttttgcacatgcatccaatcaaatcacttcatgatgtcacatttttaggttagttcctaaa |
33914028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 6914750 - 6914685
Alignment:
| Q |
112 |
ataagaaacaaactaacaaatcctaaaaatactctaacaaaatattcaaatttaaattttaatgata |
178 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
6914750 |
ataaggaacaaactaacaaattgtaaaaacacttcaacaaa-tattcaaatttaaattctaatgata |
6914685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 3660374 - 3660468
Alignment:
| Q |
187 |
gatttaatttatatacaccgaccatgtgaaacgtttttacacatacatctaaacaaatcactttatgatgccacctttttgggttagttcctaaaa |
282 |
Q |
| |
|
|||| ||||||||||||| ||| |||| |||| | | ||||||| ||| || ||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
3660374 |
gattcaatttatatacactgacaatgtaaaacttctatacacatgcattcaatcaaatcactcaatgatgcca-ctttttaggttagttcctaaaa |
3660468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 27048894 - 27048838
Alignment:
| Q |
219 |
gtttttacacatacatctaaacaaatcactttatgatgccacctttttgggttagtt |
275 |
Q |
| |
|
||||||||||| ||| || ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
27048894 |
gtttttacacacgaatccaatcaaattactttatgatgccacctttttaggttagtt |
27048838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University