View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14783_low_1 (Length: 768)
Name: NF14783_low_1
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14783_low_1 |
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| [»] scaffold0168 (1 HSPs) |
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| [»] scaffold0496 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 3 - 559
Target Start/End: Original strand, 9196444 - 9196996
Alignment:
| Q |
3 |
gaatacatggttgtcaatgatccgaagtcggaacatagttgaggtcatcatacaaagaaggttggtattttagagcttagaacgactggtgctttactcg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
9196444 |
gaatacatggttgtcaatgatccgaagtcggaacatagttgaggtcatcatacaaagaaggttggtattttaaagcttagaacgactaatgctttactcg |
9196543 |
T |
|
| Q |
103 |
cgcaaagcaaaatcctaaccattactgtggacgaattaacaaaggaaatcacaaaaatccgacagcaactgaagagcattcaggaggagcatactaagta |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9196544 |
cgcaaagcaaaatcctaaccattactgtggacgaattaataaaggaaatcacaaaaatccgacagcaactgaagagcattcaggaggagcatactaagta |
9196643 |
T |
|
| Q |
203 |
agtgatgaaatgtgagtaataattaccagataggaagcttggagacaagtttatttataggctttatcgtctgagagatcataggtaggtatatattcat |
302 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
9196644 |
agtgatgaaatgtg---aataattaccagataggaagcttggagacaagcttatttataggctttatcgtctgagaggtcataggtaggtctatattcat |
9196740 |
T |
|
| Q |
303 |
gtataacttttcgagcttatgccttagaaaaatcggctactttgccactgacatttgtgcattaaatgctcctcaagtggagagaaatggagaatagggt |
402 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
9196741 |
gtataacttttcgagcttatgccatagaaaaatcggctactttgccactgacatttgtgcattaaacgctcctcaggtggagagaaatggagaatagggt |
9196840 |
T |
|
| Q |
403 |
agacaacaagtgttttatctagtatgcatgagcacataacattcactcacataacctatatctaaaagtgaaagcaaggtaggattcctattatttgaaa |
502 |
Q |
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| T |
9196841 |
agacaac-agtgttttatctagtatgcatgagcacataacattcactcacataacctatatctaaaagtgaaagcaagttaggattcctattatttgaaa |
9196939 |
T |
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| Q |
503 |
cgggttaacattcactcatacctgaatttagttggactttggccaaccaaaaggtta |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9196940 |
cgggttaacattcactcatacctgaatttagttggactttggccaaccaaaaggtta |
9196996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 579 - 768
Target Start/End: Original strand, 9197513 - 9197701
Alignment:
| Q |
579 |
attagtcgagttttacttactctccgatcaaattataaattatcataatccttttcccaaaaatcgtagtgttaaaaggtaaaagaacatatnnnnnnnn |
678 |
Q |
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| T |
9197513 |
attagtcgagttttacttgctctccgatcaaattataaattatcataatccttttcccaaaaatcgtagtgttaaa-ggcaaaagaagatataaaaaaca |
9197611 |
T |
|
| Q |
679 |
nnnnnctatagaatgtatttccatataaactaatttcatcaacaatcaacaatataaagaagaccatagttattgcttactacaaataaa |
768 |
Q |
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| T |
9197612 |
aaaaactatagaatgtatttccatataaactaatttcatcaacaatcaacaatataaagaagaccttagttattgcttactacaaataaa |
9197701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 27128629 - 27128591
Alignment:
| Q |
286 |
ggtaggtatatattcatgtataacttttcgagcttatgc |
324 |
Q |
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| T |
27128629 |
ggtaggtctatattcatgtataacttttcgagcttatgc |
27128591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 8302832 - 8302659
Alignment:
| Q |
41 |
ttgaggtcatcatacaaagaaggttggtattttagagcttagaacgactggtgctttactcgcgcaaagcaaaatcctaaccattactgtggacgaatta |
140 |
Q |
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||||||||||||||||||||| | ||| || ||||||||| ||| | | |||| |||||| ||||||||| | |||| | || |||||| ||| || |
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| T |
8302832 |
ttgaggtcatcatacaaagaaaggtggcatattagagcttgaaacaaacgatgctctactcggacaaagcaaactattaacaagtaatgtggaggaacta |
8302733 |
T |
|
| Q |
141 |
acaaaggaaatcacaaaaatccgacagcaactgaagagcattcaggaggagcatactaagtaagtgatgaaatg |
214 |
Q |
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| T |
8302732 |
acaaagaagatggcaaaaattcaacagcaactgaaggcaattcaagaggagcgtgtcaagtaagtaatgaaatg |
8302659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 39534992 - 39534923
Alignment:
| Q |
285 |
aggtaggtatatattcatgtataacttttcgagcttatgccttagaaa-aatcggctactttgccactga |
353 |
Q |
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| T |
39534992 |
aggtaggtctatattcatgtataacttttcgagcttatgtcatataaataatcgactattttgccactga |
39534923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 39420101 - 39420052
Alignment:
| Q |
285 |
aggtaggtatatattcatgtataacttttcgagcttatgccttagaaaaa |
334 |
Q |
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| T |
39420101 |
aggtaggtctatatttatgtataacttttcgagcttatgtcatagaaaaa |
39420052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 14727381 - 14727419
Alignment:
| Q |
285 |
aggtaggtatatattcatgtataacttttcgagcttatg |
323 |
Q |
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| T |
14727381 |
aggtaggtctatattcatgtataacttttcgagcttatg |
14727419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 23585 - 23529
Alignment:
| Q |
276 |
agagatcataggtaggtatatattcatgtataacttttcgagcttatgccttagaaa |
332 |
Q |
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| T |
23585 |
agagatcacaggtaggtcgatattcatgtataactttccgagcttatgtcatagaaa |
23529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 194
Target Start/End: Original strand, 8938 - 9089
Alignment:
| Q |
43 |
gaggtcatcatacaaagaaggttggtattttagagcttagaacgactggtgctttactcgcgcaaagcaaaatcctaaccattactgtggacgaattaac |
142 |
Q |
| |
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|||||| |||||||||||| | ||| || |||||| | | ||| | || |||||||||||| ||||| ||| | |||||||| ||| |||| || |||| |
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| T |
8938 |
gaggtcgtcatacaaagaaaggtggcatattagagatcaaaacaagtgatgctttactcgcacaaaggaaacttctaaccataactatggaggatctaac |
9037 |
T |
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| Q |
143 |
aaaggaaatcacaaaaatccgacagcaactgaagagcattcaggaggagcat |
194 |
Q |
| |
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|||| | | |||||||| | |||| |||||||| ||||||||||||||| |
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| T |
9038 |
aaagcatacaacaaaaattccacagaaactgaaggcaattcaggaggagcat |
9089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 12840428 - 12840385
Alignment:
| Q |
275 |
gagagatcataggtaggtatatattcatgtataacttttcgagc |
318 |
Q |
| |
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|||||||| ||| ||||| ||||||||||||||||||||||||| |
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| T |
12840428 |
gagagatcgtagataggtctatattcatgtataacttttcgagc |
12840385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 19625333 - 19625419
Alignment:
| Q |
128 |
tgtggacgaattaacaaaggaaatcacaaaaatccgacagcaactgaagagcattcaggaggagcatactaagtaagtgatgaaatg |
214 |
Q |
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|||||| |||||||| ||| ||||| ||||||| ||| |||||||| ||||||||| ||||||| || || ||||||||||||| |
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| T |
19625333 |
tgtggaagaattaaccaagaaaatcggaaaaatcacacaacaactgaaaagcattcagaaggagcaatctgagcaagtgatgaaatg |
19625419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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