View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14783_low_11 (Length: 310)
Name: NF14783_low_11
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14783_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 52369151 - 52369433
Alignment:
| Q |
18 |
aactcttgtaaactttttgaagagtagttgcagcagcatcaagctcagaaactggtcttggagaagaaaaaacaagtgcttcaggcagagaaatcactgg |
117 |
Q |
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| T |
52369151 |
aactcttgtaaactttttgaagagtagttgcagcagcatcgagctcagaaactggccttggagaagaaaaaacaagtgcttcaggcagagaaatcaatgg |
52369250 |
T |
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| Q |
118 |
aacttgtttatgtttcaattgatcacttttggatgaatccatgttttgttctttatcttgaacaaatgaatggtttctttcaagaatcatgtgttgaggt |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52369251 |
aacttgtttatgtttcaattgatcacttttggttgaatccatgttctgttctttatcttgaacaaatgaatggtttctttcaagaatcatatgttgaggt |
52369350 |
T |
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| Q |
218 |
ctgcaatcactcaacctgcttgaagtactcatcttattggacccattatttgacaaatcagtaacagacacccccataagtataat |
303 |
Q |
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| T |
52369351 |
ctgcaatcactcaacctgcttgaagtactcatcttattggaccc---atttgacaaatcagtaacagacacccccataaatataat |
52369433 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 17492318 - 17492226
Alignment:
| Q |
18 |
aactcttgtaaactttttgaagagtagttgcagcagcatcaagctcagaaactggtcttggagaagaaaaaacaagtgcttcaggcagagaaa |
110 |
Q |
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||||||| |||||||| |||| ||||||| ||||||||||||||| |||| ||| |||||||||| ||||||| | ||| ||||| ||||| |
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| T |
17492318 |
aactcttataaactttctgaaccttagttgctgcagcatcaagctcaaaaacaggttttggagaagagaaaacaacttctttaggcaaagaaa |
17492226 |
T |
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