View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14783_low_12 (Length: 274)
Name: NF14783_low_12
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14783_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 45198343 - 45198104
Alignment:
| Q |
15 |
agcataggggcaccggagcaggtaaacaaatagacctttcaccagtcatatttgacatctatcgtttcacatgacaataaatttttgaatttccttttag |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45198343 |
agcaaaggggcaccggagcaggtaaacaaatagacctttcaccagtcatatttgacatctatcgtttcacatgacaatacatttttgaatttccttttag |
45198244 |
T |
|
| Q |
115 |
attattgatctgtgcaaccttagagaagatgtgaagaggaaagctatttccattattgataaatttgctgaacgcggtctccgttcccttgctgttggca |
214 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198243 |
attattgatctgtgcaaccttagagaagatgtaaagaggaaagctatttccattattgataaatttgctgaacgcggtctccgttcccttgctgttggca |
45198144 |
T |
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| Q |
215 |
aacaagtaagcttttcttacttcttattaatgatgacttt |
254 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |
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| T |
45198143 |
aacaagtaagcttttattacttcttattaatgatgacttt |
45198104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 23916392 - 23916622
Alignment:
| Q |
24 |
gcaccggagcaggtaaacaaatagacctttcaccagtcatatttgacatctatcgtttcacatgacaataaatttttgaatttccttttagattattgat |
123 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23916392 |
gcaccggaggaggtaaacaaatagacctttcaccggtcatatttggcatctattgtttcacatgacaataagtttttgaatttccttttagattattgat |
23916491 |
T |
|
| Q |
124 |
ctgtgcaaccttagagaagatgtgaagaggaaagctatttccattattgataaatttgctgaacgcggtctccgttcccttgctgttggcaaacaagtaa |
223 |
Q |
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|||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| ||| |
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| T |
23916492 |
ttgtgcaacgttagagaagatgtgagaaggagagctatttccattattgataaatttgctgaacgcagtctctcttcccttgctgttggtaaacaaataa |
23916591 |
T |
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| Q |
224 |
gcttttcttacttcttattaatgatgacttt |
254 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23916592 |
gcttttcttacttcttattaatgatgacttt |
23916622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 18989131 - 18988900
Alignment:
| Q |
24 |
gcaccggagcaggtaaacaaatagacctttcaccagtcatatttgacatctatcgtttcacatgacaataaatttttgaatttccttttagattattgat |
123 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18989131 |
gcaccggaggaggtaaacaaatagacctttcaccggtcatatttggcatctattgtttcacatgacaataagtttttgaatttccttttagattattgat |
18989032 |
T |
|
| Q |
124 |
ctgtgcaaccttagagaagatgtgaagaggaaagctatttccattattgataaatttgctgaacgcggtctccgttcccttgctgttggcaaacaagtaa |
223 |
Q |
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|||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||| ||| |
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| T |
18989031 |
ttgtgcaacgttagagaagatgtgagaaggagagctatttccattattgataaatttgctgaacacagtctctcttcccttgctgttggtaaacaaataa |
18988932 |
T |
|
| Q |
224 |
gcttttcttacttcttattaatgatgactttg |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
18988931 |
gcttttcttacttcttattaatgatgactttg |
18988900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 30340641 - 30340870
Alignment:
| Q |
24 |
gcaccggagcaggtaaacaaatagacctttcaccagtcatatttgacatctatcgtttcacatgacaataaatttttgaatttccttttagattattgat |
123 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30340641 |
gcaccggaggaggtaaacaaatagacctttcaccagtcatatttggcatctattgtttcacatgacaataattttttgaatttccttttagattattgaa |
30340740 |
T |
|
| Q |
124 |
ctgtgcaaccttagagaagatgtgaagaggaaagctatttccattattgataaatttgctgaacgcggtctccgttcccttgctgttggcaaacaagtaa |
223 |
Q |
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|||||| | ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||| |
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| T |
30340741 |
ttgtgcagcattagagaagatgtgagaaggagagctatttccattattgacaaatttgctgaacgcagtctctcttcccttgctgttggtaaacaagtaa |
30340840 |
T |
|
| Q |
224 |
gcttttcttacttcttattaatgatgactt |
253 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30340841 |
gcttttcttacttcttattaatgatgactt |
30340870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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