View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14783_low_15 (Length: 258)

Name: NF14783_low_15
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14783_low_15
NF14783_low_15
[»] scaffold0413 (1 HSPs)
scaffold0413 (30-242)||(7742-7954)
[»] chr7 (5 HSPs)
chr7 (39-240)||(10290201-10290402)
chr7 (176-244)||(15874975-15875043)
chr7 (162-213)||(1818761-1818812)
chr7 (138-213)||(9741658-9741733)
chr7 (153-244)||(48655490-48655581)
[»] chr1 (8 HSPs)
chr1 (30-244)||(337007-337222)
chr1 (76-244)||(21265789-21265957)
chr1 (45-209)||(37668340-37668500)
chr1 (176-244)||(6834959-6835027)
chr1 (1-85)||(21265567-21265651)
chr1 (138-223)||(9538279-9538364)
chr1 (180-244)||(43409076-43409141)
chr1 (180-222)||(2271041-2271083)
[»] chr6 (4 HSPs)
chr6 (34-241)||(10752581-10752790)
chr6 (176-244)||(34635339-34635407)
chr6 (176-244)||(25003974-25004043)
chr6 (159-215)||(32451538-32451596)
[»] chr2 (5 HSPs)
chr2 (30-244)||(40446383-40446597)
chr2 (30-244)||(14489845-14490062)
chr2 (45-209)||(16132119-16132280)
chr2 (72-244)||(12775754-12775923)
chr2 (162-208)||(40730546-40730592)
[»] chr8 (4 HSPs)
chr8 (45-223)||(21232777-21232955)
chr8 (181-244)||(42078429-42078492)
chr8 (206-244)||(41162321-41162359)
chr8 (164-244)||(41959471-41959551)
[»] chr3 (6 HSPs)
chr3 (98-244)||(46405450-46405600)
chr3 (176-244)||(16474108-16474177)
chr3 (181-242)||(15997337-15997398)
chr3 (176-244)||(16974361-16974428)
chr3 (152-213)||(52642422-52642483)
chr3 (162-244)||(5025531-5025619)
[»] scaffold0618 (1 HSPs)
scaffold0618 (98-244)||(5189-5340)
[»] chr5 (6 HSPs)
chr5 (176-244)||(535883-535951)
chr5 (177-224)||(42859750-42859797)
chr5 (142-208)||(38985520-38985587)
chr5 (163-220)||(25668602-25668659)
chr5 (143-215)||(30909125-30909201)
chr5 (75-207)||(42640048-42640171)
[»] chr4 (4 HSPs)
chr4 (176-244)||(40457772-40457841)
chr4 (181-241)||(41947301-41947361)
chr4 (181-244)||(10345631-10345694)
chr4 (138-223)||(49497030-49497115)
[»] scaffold0758 (1 HSPs)
scaffold0758 (142-215)||(468-544)


Alignment Details
Target: scaffold0413 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 7954 - 7742
Alignment:
Q  30 cgtgtagtatatatctcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7954 cgtgtagtatatatctcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagatgcagcagt 7855  T
Q  130 aaaggattttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7854 aaaggattttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagat 7755  T
Q  230 tcaattaataaac 242  Q
    |||||||||||||    
T  7754 tcaattaataaac 7742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 10290201 - 10290402
Alignment:
Q  39 tatatctcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagtaaaggattt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  10290201 tatatctcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataaattacaaataaagatgcagcagtaaaggattt 10290300  T
Q  139 tattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290301 tattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaat 10290400  T
Q  239 aa 240  Q
    ||    
T  10290401 aa 10290402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 15874975 - 15875043
Alignment:
Q  176 cctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874975 cctatttttgtcataccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 15875043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 1818761 - 1818812
Alignment:
Q  162 taagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaa 213  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  1818761 taagatataattatcatatttttgtcacaccaaattgattaataaaaatgaa 1818812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 9741733 - 9741658
Alignment:
Q  138 ttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaa 213  Q
    ||||| ||||||| |||||| || |||| ||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  9741733 ttatttgaataaaaataaattatgtaaggaatgattattctatttttgtcacaccaaactgattaataaaaatgaa 9741658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 48655490 - 48655581
Alignment:
Q  153 taaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||| || |||| ||| ||||||||||||||| |||||  |||||||||||||||||| | || ||||||  | ||  |||||||||||||    
T  48655490 taaatcatgtaaggaattattatcctatttttggcacacataattgattaataaaaatgcactatatgaaagaaaatctaattaataaacca 48655581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 337222 - 337007
Alignment:
Q  30 cgtgtagtatatatctcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagaggcag--ca 127  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||  ||    
T  337222 cgtgtagtatatatctcaaaactgaaaaccaacttatgcaataattaatttaataccaaaaattacctttaaaataagttacaaataaagatgcagcaca 337123  T
Q  128 gtaaaggattttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcag 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  337122 gtaaaggattttattagaataaatataaataatttaagaaataattatcctattttt-tcacaccaaattgattaataaaaatgaaatagatgaaatcag 337024  T
Q  228 attcaattaataaacca 244  Q
    |||||||||||||||||    
T  337023 attcaattaataaacca 337007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 21265789 - 21265957
Alignment:
Q  76 aatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagtaaaggattttattagaataaatataaataatttaagaaataattat 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21265789 aatataataccaaaaattacctttaaaataagttacaaataaagatgcagcagtaaaggattttattagaataaatataaataatttaagaaataattat 21265888  T
Q  176 cctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21265889 cctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcaaattcaattaataaacca 21265957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 37668340 - 37668500
Alignment:
Q  45 tcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagtaaaggattttattag 144  Q
    ||||||||||||||    |||||||||||||||||||     |||||||| ||||||||||||||||||||||||| ||| ||| || | ||||||||||    
T  37668340 tcaaaactgaaaactggtttatacaataattaatatat----aaaaattaactttaaaataagttacaaataaagatgcaacagcaaggaattttattag 37668435  T
Q  145 aataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaa 209  Q
    ||||||||||||||||||||||||||||||||||| ||||  |||| ||||||||||||||||||    
T  37668436 aataaatataaataatttaagaaataattatcctactttttccacaacaaattgattaataaaaa 37668500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 6835027 - 6834959
Alignment:
Q  176 cctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6835027 cctatttttgtcataccaaattgattaataaaaattaaatagatgaaatcagattcaattaataaacca 6834959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 21265567 - 21265651
Alignment:
Q  1 tggcatcaattaggcaaggatnnnnnnnncgtgtagtatatatctcaaaactgaaaaccaacttatacaataattaatataatac 85  Q
    |||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21265567 tggcatcaattatgcaaggataaaaaaaacgtgtagtatatatctcaaaactgaaaaccaacttatacaataattaatataatac 21265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 9538279 - 9538364
Alignment:
Q  138 ttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaa 223  Q
    ||||| ||||||| |||||| || |||| ||| |||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  9538279 ttatttgaataaaaataaatcatgtaaggaatgattatcctatttttgtcacaccaaattgattattaaaaatgaactatatgaaa 9538364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 43409076 - 43409141
Alignment:
Q  180 tttttgtcacaccaaattgattaataaaa-atgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43409076 tttttttcaaaccaaattgattaataaaaaatgaaatagatgaaatcagattcaattaataaacca 43409141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 2271041 - 2271083
Alignment:
Q  180 tttttgtcacaccaaattgattaataaaaatgaaatagatgaa 222  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  2271041 tttttgtcacaccaaatagattaataaaaataaaatagatgaa 2271083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 10752581 - 10752790
Alignment:
Q  34 tagtatatatctcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagtaaag 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||    
T  10752581 tagtatatatctcaaaactgaaaaccaacttatacaataattaatataataccaaaaattatctttaaaataagttacaaataaagatgccgcagtaaag 10752680  T
Q  134 gattttattagaataaatataaataatttaagaaataattatccta--tttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10752681 gattttattagaataaatataaataatttaagaaataattatcctatttttttgtcacaccaaattgattaataaaaatgaaatagatgaaattagattc 10752780  T
Q  232 aattaataaa 241  Q
    ||||||||||    
T  10752781 aattaataaa 10752790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 34635407 - 34635339
Alignment:
Q  176 cctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34635407 cctatttttgtcataccaaattgatcaataaaaatgaaatagatgaaatcagattcaattaataaacca 34635339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 25004043 - 25003974
Alignment:
Q  176 cctatttttgtcacaccaaattgattaataaaaa-tgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25004043 cctatttttttcacaccaaattgattaataaaaaatgaaatagatgaaatcagattcaattaataaacca 25003974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 32451538 - 32451596
Alignment:
Q  159 atttaagaaataattatcctatttttgt--cacaccaaattgattaataaaaatgaaat 215  Q
    |||||||||||||||||| ||||||| |  ||||||||||||||| |||||||||||||    
T  32451538 atttaagaaataattatcttattttttttccacaccaaattgatttataaaaatgaaat 32451596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 40446597 - 40446383
Alignment:
Q  30 cgtgtagtatatatctcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagaggcagca-- 127  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||  |||| ||||||      
T  40446597 cgtgtagtatatatctcaaaactgaaaaccaacttatgcaataattaatttaataccaaaaattacctttaaaataagttacaaa--aagatgcagcaca 40446500  T
Q  128 gtaaaggattttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcag 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40446499 gtaaaggattttattagaataaatataaataatttaagaaataattatcctatttttttcacaccaaattgattaataaaaatgaaatagatgaaatcag 40446400  T
Q  228 attcaattaataaacca 244  Q
    |||||||||||||||||    
T  40446399 attcaattaataaacca 40446383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 14490062 - 14489845
Alignment:
Q  30 cgtgtagtatatatctcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagt 129  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  14490062 cgtgtagtatatatctcaaaactgaaaaccaatttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagatgcagcagg 14489963  T
Q  130 aaaggattttattagaataaatataaataatttaagaaataattatcctatttttgt--cacaccaaattgattaataaaaatgaaatagatgaaatcag 227  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| |||| ||||| ||||||||| ||| |     
T  14489962 aaagaattttattagaataaatataaataatttaagaaataattatcctatttttgttacacacctaattgagtaattaaaataaaatagatggaataaa 14489863  T
Q  228 attc-aattaataaacca 244  Q
    |||| ||||||| |||||    
T  14489862 attctaattaattaacca 14489845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 16132119 - 16132280
Alignment:
Q  45 tcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagtaaaggattttattag 144  Q
    ||||||||||||||    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  16132119 tcaaaactgaaaactggtttatacaataattaatataatac-aaaaattaactttaaaataagttacaaataaagatgcagcagcaaagaattttattag 16132217  T
Q  145 aataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaa 209  Q
    ||||||||||||||||||||||| ||||  ||||| ||||  |||||||||||||||||||||||    
T  16132218 aataaatataaataatttaagaattaat--tcctacttttaccacaccaaattgattaataaaaa 16132280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 244
Target Start/End: Original strand, 12775754 - 12775923
Alignment:
Q  72 aattaatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagtaaaggattttattagaataaatataaataatttaagaaataa 171  Q
    |||||||||||||| ||  |||| || ||||||| ||||||| |||| |  || ||||||| |||||     ||||||| |||||| || |||| ||| |    
T  12775754 aattaatataatacaaattattaactctaaaataggttacaagtaaaaatacaacagtaaatgattt-----gaataaaaataaatcatgtaaggaatga 12775848  T
Q  172 ttatcctatttttgtcacaccaaattgattaataaaa---atgaaatagatgaaatcagattcaattaataaacca 244  Q
    | | |||||||||||||||||||||||||||| ||||   |||||||||||| |||||||||||||| ||||||||    
T  12775849 taa-cctatttttgtcacaccaaattgattaaaaaaaaaaatgaaatagatggaatcagattcaattgataaacca 12775923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 40730546 - 40730592
Alignment:
Q  162 taagaaataattatcctatttttgtcacaccaaattgattaataaaa 208  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  40730546 taagatataattattatatttttgtcacaccaaattgattaataaaa 40730592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 21232777 - 21232955
Alignment:
Q  45 tcaaaactgaaaaccaacttatacaataattaatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagtaaaggattttattag 144  Q
    ||||||||||||||    ||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||| ||||||| |||| ||||||||||    
T  21232777 tcaaaactgaaaacttgtttatacaataattaatataatac-aaaaactaactttaaaataagttaaaaataaagatgcagcagcaaagaattttattag 21232875  T
Q  145 aataaa-tataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaa 223  Q
    |||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||    
T  21232876 aataaaatataaataatctaagaaataattatcctacttttgccacaccaaattgattaataaaaatgaactatatgaaa 21232955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 42078429 - 42078492
Alignment:
Q  181 ttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  42078429 ttttgtcataccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaacca 42078492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 41162359 - 41162321
Alignment:
Q  206 aaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  41162359 aaaataaaatagatgaaatcaaattcaattaataaacca 41162321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 41959471 - 41959551
Alignment:
Q  164 agaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattc-aattaataaacca 244  Q
    ||||||| |||||||||||| || ||| ||| || |||||||||||| ||||||||| ||| |||||| ||||||| |||||    
T  41959471 agaaatacttatcctatttt-gtgacatcaagtttattaataaaaataaaatagatggaataagattctaattaattaacca 41959551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 98 - 244
Target Start/End: Original strand, 46405450 - 46405600
Alignment:
Q  98 ttaaaataagttacaaataaagaggcagcagtaaaggattttattagaataaatataaataatttaagaaataattatccta----tttttgtcacacca 193  Q
    ||||||||||||  ||||||||| || |||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||    ||||| ||| ||||    
T  46405450 ttaaaataagtttaaaataaagatgccgcagcaaagaattttattaaaataaatataaataatctaagaaataattatcctacttttttttttcatacca 46405549  T
Q  194 aattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46405550 aattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 46405600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 16474177 - 16474108
Alignment:
Q  176 cctatttttgtcacaccaaattgattaataaaaa-tgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16474177 cctatttttttcacaccaaattgattaataaaaaatgaaatagatgaaatcagattcaattaataaacca 16474108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 15997337 - 15997398
Alignment:
Q  181 ttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaac 242  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  15997337 ttttgtcacaccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaac 15997398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 16974428 - 16974361
Alignment:
Q  176 cctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  16974428 cctatttttgtcac-ccaaattgattaataaaaatgaaatagatggaatcagattcaattgataaacca 16974361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 52642422 - 52642483
Alignment:
Q  152 ataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaa 213  Q
    |||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52642422 ataaatcatgtaggaaataattatcttatttttgtcacaccaaattgattaataaaaatgaa 52642483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 5025531 - 5025619
Alignment:
Q  162 taagaaataattatcctatttttgt---cacaccaaattgattaataaaa---atgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||||||||||| ||||| |   | ||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  5025531 taagaaataattatccttttttttttctcgcaccaaagtgattaataaaaaaaatgaaatagatgaaatcagattcaattaataaacca 5025619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 98 - 244
Target Start/End: Complemental strand, 5340 - 5189
Alignment:
Q  98 ttaaaataagttacaaataaagaggcagcagtaaaggattttattagaataaatataaataatttaagaaataattatccta----tttttgtc-acacc 192  Q
    ||||||||||||  ||||||||| || |||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||    ||||| || | |||    
T  5340 ttaaaataagtttaaaataaagatgccgcagcaaagaattttattaaaataaatataaataatctaagaaataattatcctacttttttttttctatacc 5241  T
Q  193 aaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5240 aaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 5189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 535951 - 535883
Alignment:
Q  176 cctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  535951 cctatttttgtcataccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 535883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 42859797 - 42859750
Alignment:
Q  177 ctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaat 224  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  42859797 ctatttttgtcacaccaaattgattaataaaaataaaatagatgaaat 42859750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 38985520 - 38985587
Alignment:
Q  142 tagaataaatataaataatttaagaaataattatcctatttttgtcacacc-aaattgattaataaaa 208  Q
    ||||||||| | ||||||| ||||| ||||||||| | ||||||||||||| ||||||||||||||||    
T  38985520 tagaataaaaagaaataatgtaagatataattatcatctttttgtcacaccaaaattgattaataaaa 38985587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 25668659 - 25668602
Alignment:
Q  163 aagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatg 220  Q
    |||| |||||| || ||||||| | |||||||||||||||||||||||||| ||||||    
T  25668659 aagatataattctcatatttttatgacaccaaattgattaataaaaatgaagtagatg 25668602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 30909201 - 30909125
Alignment:
Q  143 agaataaatataaataatttaagaaataattatcctattttt----gtcacaccaaattgattaataaaaatgaaat 215  Q
    |||||||| |||||| || || |||||||||||||| |||||     |||||||||||||||| |||||||||||||    
T  30909201 agaataaaaataaattatgtatgaaataattatccttttttttttcttcacaccaaattgatttataaaaatgaaat 30909125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 42640171 - 42640048
Alignment:
Q  75 taatataataccaaaaattacctttaaaataagttacaaataaagaggcagcagtaaaggattttattagaataaatataaataatttaagaaataatta 174  Q
    |||||||||||  ||||||| ||||||||||| | |||||| || | ||| || |||||||||     |||||||| | |||  ||||||||||||||||    
T  42640171 taatataatac--aaaattaactttaaaataaatcacaaattaaaatgcaacaataaaggatt-----agaataaaaagaaa--atttaagaaataatta 42640081  T
Q  175 tcctatttttgtcacaccaaattgattaataaa 207  Q
    || ||||||   ||||||||||||||| |||||    
T  42640080 tcttattttctccacaccaaattgatttataaa 42640048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 40457841 - 40457772
Alignment:
Q  176 cctatttttgtcacaccaaattgattaataaaaa-tgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40457841 cctatttttttcaaaccaaattgattaataaaaaatgaaatagatgaaatcagattcaattaataaacca 40457772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 41947301 - 41947361
Alignment:
Q  181 ttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaa 241  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  41947301 ttttgtcacaccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaa 41947361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 10345631 - 10345694
Alignment:
Q  181 ttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaacca 244  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  10345631 ttttgtcgcaccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaacca 10345694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 49497115 - 49497030
Alignment:
Q  138 ttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaa 223  Q
    ||||| |||| || |||||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  49497115 ttatttgaatgaaaataaatcatttaaggaatgattatcctatttttgtcacaccaaattgattattaaaaatgaactatatgaaa 49497030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 468 - 544
Alignment:
Q  142 tagaataaatataaataatttaagaaataattatcctatttttgtc---acaccaaattgattaataaaaatgaaat 215  Q
    ||||||||| |||||| || ||||||||||||||| | ||||| ||   |||||||||||||| |||||||||||||    
T  468 tagaataaaaataaattatgtaagaaataattatcttttttttttcttcacaccaaattgatttataaaaatgaaat 544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University