View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14783_low_2 (Length: 631)
Name: NF14783_low_2
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14783_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 89 - 534
Target Start/End: Original strand, 13277447 - 13277887
Alignment:
| Q |
89 |
ctctttcatctctctgaactggaatagcagcaaattagagaatccatccttgatctcatctccctcttcgccaaagaaattgttgtcggtggaggcttgt |
188 |
Q |
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| T |
13277447 |
ctctttcatctctctgaactggaatagcagcaaattagagaatccatcattgatctcatctccctcttcctcaaagaaattgttgtcggtggaggcttgt |
13277546 |
T |
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| Q |
189 |
tggggtttcttccatttcatagctgagaaataaagccatttcattgttgagaaataaagccataaatgattggtttttagggtttttctttggggttgtt |
288 |
Q |
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| T |
13277547 |
tggggtttcttcgatttcatagctgagaaataaagccatttcattgttgagaaataaagccataaatgattggtttttagggtttttctttggggttgtt |
13277646 |
T |
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| Q |
289 |
ttgatgatgagtttcaaatttggaaaggaggatgtgaaattttgggttgagaagtttaggacttgttatcctgttgcacaaattgcattgaagaatagaa |
388 |
Q |
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| T |
13277647 |
ttgatgatgagtttcaaattgggaaaggaggatgtgaaattttgggttgagaagtttaggacttgttatcctgttgcacaaattgcattgaagaatagaa |
13277746 |
T |
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| Q |
389 |
atagaaaatggagagtatcaatttaagagcatggttatcttg---nnnnnnnnaacacttgtttgattcaattcaatcattattaaaagattgttttcgg |
485 |
Q |
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| T |
13277747 |
atagaaaatggagagtatcaatttaagagcatggttatcttgtttttttttttaacacttgtttgattcaattcaatcact--------attgttttcgg |
13277838 |
T |
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| Q |
486 |
taattgttgattcttgtatactccggtatgtataacgaaatgatgatga |
534 |
Q |
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| T |
13277839 |
taattgttgatttttgtatactccactgtgtataacgaaatgatgatga |
13277887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 616
Target Start/End: Original strand, 13277939 - 13277969
Alignment:
| Q |
586 |
attgttctgaaaataaaataatggattttct |
616 |
Q |
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| T |
13277939 |
attgttctgaaaataaaataatggattttct |
13277969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 226 - 509
Target Start/End: Complemental strand, 36808619 - 36808328
Alignment:
| Q |
226 |
atttcattgttgagaaataaagccataaatgattggtttttagggtttttctttggggttgttttgatgatgagtttcaaatttggaaaggaggatgtga |
325 |
Q |
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| T |
36808619 |
atttcattgttaagaaataaagtcataaaggattggtttttagggtttttcttgggggctgttttgatgatgagtttcagattgggaaaagaggatgtga |
36808520 |
T |
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| Q |
326 |
aattttgggttgagaagtttaggacttgttatcctgttgcacaaattgcattgaagaatagaaatagaaaatggagagtatcaatttaagag-catggtt |
424 |
Q |
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| T |
36808519 |
aattttgggttgagaagtttaggacttgttctcctgttgcacaaattgcattgaagaatagaaatagaaaatggaaagtatcaaaatgagagccatggtt |
36808420 |
T |
|
| Q |
425 |
atcttgnnnnnnnna--acac-----ttgtttgattcaattcaatcattattaaaagattgttttcggtaattgttgattcttgtatactcc |
509 |
Q |
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| T |
36808419 |
attttgttttttttactacaccactattgtttgattcaattcaatcactcttgaaagattgttctgtgtaattgttgattcttgtatactcc |
36808328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 443 - 534
Target Start/End: Complemental strand, 50880236 - 50880145
Alignment:
| Q |
443 |
cttgtttgattcaattcaatcattattaaaagattgttttcggtaattgttgattcttgtatactccggtatgtataacgaaatgatgatga |
534 |
Q |
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| T |
50880236 |
cttgtttgattcaattcaatcactgttaaaagattgttttatgtaattgttgattcttgtatactccactgtgtataacgaaatgatgatga |
50880145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 443 - 534
Target Start/End: Original strand, 48081114 - 48081205
Alignment:
| Q |
443 |
cttgtttgattcaattcaatcattattaaaagattgttttcggtaattgttgattcttgtatactccggtatgtataacgaaatgatgatga |
534 |
Q |
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| T |
48081114 |
cttgtttgattcaattcaatcaccgttaaaagattgttttctgtaattgttgattcttgtatactccactgtgtataacaaaatgatgatga |
48081205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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