View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14783_low_20 (Length: 214)
Name: NF14783_low_20
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14783_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 10741199 - 10741042
Alignment:
| Q |
1 |
attcctcataacctctgtgatccaggccaaactcaacaccaatgcaatgataaccaaaggcggaaaataaaagttcaaagctccaactactgctaaagtc |
100 |
Q |
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| T |
10741199 |
attcctcataacctctgtggtccaagccaaactcaacaccaatgcgatgataaccaaaggcggaaaataaaagttcaaagctccaactactgctaaagtc |
10741100 |
T |
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| Q |
101 |
catagagatatccacaagaatccagccgcaagcatgtaataagtaggtcgattcaaat |
158 |
Q |
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| T |
10741099 |
cacagagatatccacaagaatccagccgcaagcatgtaataagtaggtcgattcaaat |
10741042 |
T |
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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 5230755 - 5230818
Alignment:
| Q |
151 |
attcaaatgctaccattaatttaacgctataaataattgctttgggatcatatgtttaattttt |
214 |
Q |
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| T |
5230755 |
attcaaatgctaccattaatttaaagctataaatatttcatttgggatcatatgtttaattttt |
5230818 |
T |
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