View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14783_low_21 (Length: 212)
Name: NF14783_low_21
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14783_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 35369315 - 35369120
Alignment:
| Q |
1 |
gacatatgagatattgtattgggtccctttcagcccatatgaaagagtatatgctgtggccaatccatgggattagaatcacgaacttaattagtgttca |
100 |
Q |
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| T |
35369315 |
gacatatgagatattgtattgggtccctttcaacccatatgaaagagtatatgctgtggccaatccatgggattagaatcacgaacttaattagtgtcca |
35369216 |
T |
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| Q |
101 |
taacatgatacatgcaacacaaagataaataataatgtcagtcagaaatcaaaacttgaaatgcttcaaaaataaaccgtaaaactatgacctata |
196 |
Q |
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| T |
35369215 |
taacatgatacatgcaacacaaagataaataataatgtcagtcagaaatcaaaacttgaaatgcttcaaaaataaaccgtaaaactatgacctata |
35369120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 35378180 - 35378112
Alignment:
| Q |
20 |
tgggtccctttcagcccatatgaaagagtatatgctgtggccaatccatgggattagaatcacgaactt |
88 |
Q |
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| T |
35378180 |
tgggtccctttcaccccatatgaaagtgtatatgctatgagcaatccatgggattacaatcacgaactt |
35378112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 35354258 - 35354190
Alignment:
| Q |
24 |
tccctttcagcccatatgaaagagtatatgctgtggccaatccatgggattagaatcacgaacttaatt |
92 |
Q |
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| T |
35354258 |
tccctttcaccccatatgaaagagtacatgctatgagcaatccacgggcttagaatcatgaacttaatt |
35354190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 19632726 - 19632779
Alignment:
| Q |
34 |
cccatatgaaagagtatatgctgtggccaatccatgggattagaatcacgaact |
87 |
Q |
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| T |
19632726 |
cccatatgaaagagtatatgctatgagcaatccatggacttagaatcacgaact |
19632779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 19683617 - 19683562
Alignment:
| Q |
34 |
cccatatgaaagagtatatgctgtggccaatccatgggattagaatcacgaactta |
89 |
Q |
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| T |
19683617 |
cccatataaaagagtatatgctatgagcaatccacgggcttagaatcacgaactta |
19683562 |
T |
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