View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14783_low_4 (Length: 457)

Name: NF14783_low_4
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14783_low_4
NF14783_low_4
[»] chr8 (8 HSPs)
chr8 (176-440)||(37426840-37427093)
chr8 (77-151)||(37427107-37427181)
chr8 (35-78)||(27678557-27678600)
chr8 (35-78)||(3656586-3656629)
chr8 (35-76)||(13486455-13486496)
chr8 (35-84)||(40484681-40484730)
chr8 (39-76)||(5969296-5969333)
chr8 (35-75)||(14910932-14910972)
[»] chr6 (3 HSPs)
chr6 (35-80)||(11466198-11466243)
chr6 (35-76)||(22350471-22350512)
chr6 (35-76)||(21528099-21528140)
[»] chr2 (4 HSPs)
chr2 (35-79)||(37314224-37314268)
chr2 (38-79)||(18541523-18541564)
chr2 (35-76)||(7502187-7502228)
chr2 (35-76)||(29523122-29523163)
[»] chr3 (4 HSPs)
chr3 (35-76)||(23241319-23241360)
chr3 (35-78)||(2848492-2848535)
chr3 (35-76)||(30464497-30464538)
chr3 (35-76)||(33635835-33635876)
[»] scaffold0070 (1 HSPs)
scaffold0070 (35-77)||(13448-13490)
[»] chr7 (7 HSPs)
chr7 (35-76)||(29984198-29984239)
chr7 (35-79)||(1583220-1583264)
chr7 (35-78)||(14801280-14801323)
chr7 (35-78)||(15248272-15248315)
chr7 (35-76)||(11733479-11733520)
chr7 (35-76)||(20624059-20624100)
chr7 (35-76)||(36098824-36098865)
[»] chr5 (5 HSPs)
chr5 (35-79)||(40144672-40144716)
chr5 (35-78)||(33898150-33898193)
chr5 (35-76)||(8760208-8760249)
chr5 (35-76)||(22638808-22638849)
chr5 (35-76)||(33224109-33224150)
[»] chr1 (4 HSPs)
chr1 (35-77)||(28235726-28235768)
chr1 (35-76)||(44258546-44258587)
chr1 (35-79)||(48302484-48302529)
chr1 (44-76)||(9294563-9294595)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 176 - 440
Target Start/End: Complemental strand, 37427093 - 37426840
Alignment:
Q  176 ctagtttttattaagggaagaagaacacgtaggagagccataagcaacttagaacagaaccgaacaaaatctcttcatccaccacccataatcaacaact 275  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37427093 ctagtttttattaagggaagaagaacacgtaagagagccataagcaacttagaacagaaccgaacaaaatctcttcatccaccacccataatcaacaact 37426994  T
Q  276 cccttcgccaccctcctctgccaccgacctcctccacaccgtcgactatcagctgttcacctctctcttctcaatctcttgttacacagtggaattgaat 375  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37426993 cccttcgccgccctcctctgccaccgacctcctccacaccgtcgactatcagttgttcacctctctcttctcaatctcttgttacacagtggaattgaat 37426894  T
Q  376 tgggattaattaaggattaatccaggttgatgaattgatttacaaccaccaatatactatgagac 440  Q
    ||||||           ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37426893 tgggat-----------taatccaggttgatgaattgatttacaaccaccaatatactatgagac 37426840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 37427181 - 37427107
Alignment:
Q  77 cttcaatgcctttaaggcgccaaagtcacctgcctttgccccaatcaaatgttgccaagtgtccctgctttgttt 151  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  37427181 cttcaatgcctttaaggcgccaaagtcacctgcctttgcaccaatcaaatgttgccaagtgtcactgctttgttt 37427107  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 27678600 - 27678557
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgct 78  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  27678600 accggttcaaccggccggtccggtccggttttcaaaactatgct 27678557  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 3656586 - 3656629
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgct 78  Q
    |||||||||||||||||| ||||||| |||||||||||||||||    
T  3656586 accggttcaaccggccggtccggtccagttttcaaaactatgct 3656629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 13486496 - 13486455
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  13486496 accggttcaaccggccggtccggtccgcttttcaaaactatg 13486455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 40484730 - 40484681
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgcttcaatg 84  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||| ||||    
T  40484730 accggttcgaccggccggtccggtccggtttttaaaactatgcttaaatg 40484681  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 5969333 - 5969296
Alignment:
Q  39 gttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  5969333 gttcaaccggccggtccggtccggttttcaatactatg 5969296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 14910932 - 14910972
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactat 75  Q
    |||||||| ||||||||| ||| ||||||||||||||||||    
T  14910932 accggttcgaccggccggtccgatccggttttcaaaactat 14910972  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 11466198 - 11466243
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgcttc 80  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  11466198 accggttcaaccggccggtccggtccggttttcaaaactatgcttc 11466243  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 22350512 - 22350471
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||| ||||||||| |||||||||||||||||||||||    
T  22350512 accggttcgaccggccggtccggtccggttttcaaaactatg 22350471  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 21528140 - 21528099
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    ||||||| |||||||||| ||||||||| |||||||||||||    
T  21528140 accggttgaaccggccggtccggtccgggtttcaaaactatg 21528099  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 37314268 - 37314224
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgctt 79  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  37314268 accggttcaaccggccggtccggtccggttttcaaaactatgctt 37314224  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 18541523 - 18541564
Alignment:
Q  38 ggttcaaccggccgggccggtccggttttcaaaactatgctt 79  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  18541523 ggttcgaccggccggtccggtccggttttcaaaactatgctt 18541564  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 7502187 - 7502228
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    ||||||| |||||||||| ||||||||| |||||||||||||    
T  7502187 accggttgaaccggccggtccggtccgggtttcaaaactatg 7502228  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 29523163 - 29523122
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||| ||| ||||| |||||||||||||||||||||||    
T  29523163 accggttcgaccagccggtccggtccggttttcaaaactatg 29523122  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 23241360 - 23241319
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  23241360 accggttcaaccggccggtccggtccggttttcaaaactatg 23241319  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 2848535 - 2848492
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgct 78  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||    
T  2848535 accggttcgaccggccggtccggtccggtttttaaaactatgct 2848492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 30464538 - 30464497
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||||||||||||| |||||| | ||||||||||||||    
T  30464538 accggttcaaccggccggtccggtctgattttcaaaactatg 30464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 33635835 - 33635876
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||| ||||||||  |||||||||||||||||||||||    
T  33635835 accggttcgaccggccgatccggtccggttttcaaaactatg 33635876  T

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Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 13448 - 13490
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgc 77  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  13448 accggttcaaccggccggttcggtccggttttcaaaactatgc 13490  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 29984198 - 29984239
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  29984198 accgattcaaccggccggtccggtccggttttcaaaactatg 29984239  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 1583220 - 1583264
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgctt 79  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||    
T  1583220 accggttcaaccggccggtccggtccgatttttaaaactatgctt 1583264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 14801323 - 14801280
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgct 78  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  14801323 accggttcaaccggccgatccggtccgattttcaaaactatgct 14801280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 15248315 - 15248272
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgct 78  Q
    |||||||||||||||||  |||||||| ||||||||||||||||    
T  15248315 accggttcaaccggccgatccggtccgattttcaaaactatgct 15248272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 11733520 - 11733479
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||| |||| |||| |||||||||||||||||||||||    
T  11733520 accggttcgaccgaccggtccggtccggttttcaaaactatg 11733479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 20624059 - 20624100
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||||||||||||| ||| ||||||||| |||||||||    
T  20624059 accggttcaaccggccggtccgatccggttttaaaaactatg 20624100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 36098865 - 36098824
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||| ||||||||| ||||||||||||| |||||||||    
T  36098865 accggttcgaccggccggtccggtccggtttttaaaactatg 36098824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 40144672 - 40144716
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgctt 79  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||    
T  40144672 accggttcaaccgaccggtccggcccggttttcaaaactatgctt 40144716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 33898193 - 33898150
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgct 78  Q
    |||||| |||||||||||  ||||||||||||||||||||||||    
T  33898193 accggtccaaccggccggttcggtccggttttcaaaactatgct 33898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 8760249 - 8760208
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||| ||||||||  |||||||||||||||||||||||    
T  8760249 accggttcgaccggccgatccggtccggttttcaaaactatg 8760208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 22638808 - 22638849
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||||||||||||| ||| |||| ||||||||||||||    
T  22638808 accggttcaaccggccggtccgatccgattttcaaaactatg 22638849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 33224150 - 33224109
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||||||||||||| ||| ||||||||| |||||||||    
T  33224150 accggttcaaccggccggtccgatccggttttaaaaactatg 33224109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 28235726 - 28235768
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatgc 77  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||    
T  28235726 accggttcgaccggccggtccggtccggtttttaaaactatgc 28235768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 44258546 - 44258587
Alignment:
Q  35 accggttcaaccggccgggccggtccggttttcaaaactatg 76  Q
    |||||||||||||| ||| |||||||| ||||||||||||||    
T  44258546 accggttcaaccggacggtccggtccgattttcaaaactatg 44258587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 48302529 - 48302484
Alignment:
Q  35 accggttcaa-ccggccgggccggtccggttttcaaaactatgctt 79  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||    
T  48302529 accggttcaaaccgtccggtccggtccggttttcaaaactatgctt 48302484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 9294563 - 9294595
Alignment:
Q  44 accggccgggccggtccggttttcaaaactatg 76  Q
    ||||||||| |||||||||||||||||||||||    
T  9294563 accggccggtccggtccggttttcaaaactatg 9294595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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