View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14783_low_5 (Length: 389)
Name: NF14783_low_5
Description: NF14783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14783_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 2588331 - 2588688
Alignment:
| Q |
20 |
gcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctccaaatattcagaagattaagagtattgctagacgttcg |
119 |
Q |
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| T |
2588331 |
gcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacatatgtctccaaatattcagaagattaagagtattgctagacgttcg |
2588430 |
T |
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| Q |
120 |
aggagcctgcaaaatagattcactgctaaggatacagctatttggcttgctgttattgattatgaagaaagattggcaagagaaatgtatcctgaatcat |
219 |
Q |
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| T |
2588431 |
aggagcctgcaaaatagattcactgctaaggatacagctatttggcttgctgttattgattatgaagaaagattggcaagagaaatgtatcctgaatcat |
2588530 |
T |
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| Q |
220 |
tcttaaattcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgatgagcacaatctaggaaaacctttatc |
319 |
Q |
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| T |
2588531 |
tcttaaaatcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgatgagcacaatctagaaaaacctttatc |
2588630 |
T |
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| Q |
320 |
atcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttct |
377 |
Q |
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| T |
2588631 |
atcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttct |
2588688 |
T |
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