View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_109 (Length: 212)
Name: NF14784_high_109
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_109 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 41657516 - 41657690
Alignment:
| Q |
23 |
aatttgtatgttatcgtcattctattattgttttaattgtaacaaacaaataatcaagatgactcctgcatattatatttttctttccatccttttatgg |
122 |
Q |
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| T |
41657516 |
aatttgtatgttaccgtcattctattattgttttaattgtaacaaacacataatcaagatgactcctgcatattatatttttctttccatccttttatgg |
41657615 |
T |
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| Q |
123 |
atctgttatatcattccttactttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtg |
198 |
Q |
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| T |
41657616 |
atctgtgatatcattcctta-tttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtg |
41657690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 43226508 - 43226423
Alignment:
| Q |
110 |
catccttttatggatctgttatatcattccttactttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtg |
198 |
Q |
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| T |
43226508 |
catccttttatggatccatgatatcattccttatttt---gtatagggaactgttgttcttgtttttcaaccagcagaagaaggaggtg |
43226423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 43204800 - 43204715
Alignment:
| Q |
112 |
tccttttatggatctgttatatcattccttactttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtg |
198 |
Q |
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| T |
43204800 |
tccttctatgtatctgtgatatcattcctta-tttttattatagggaacaatagttcttgtttttcaaccagcagaagaaggaggtg |
43204715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 41651630 - 41651678
Alignment:
| Q |
150 |
gtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtg |
198 |
Q |
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| T |
41651630 |
gtatagggaactgttgttcttgtttttcaaccagcagaagaaggaggtg |
41651678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 43211782 - 43211738
Alignment:
| Q |
154 |
agggaacagttgttcttgtttttcaaccagcagaagaaggaggtg |
198 |
Q |
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| T |
43211782 |
agggaacgattgttcttgtttttcaaccagcagaagaaggaggtg |
43211738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 25928787 - 25928703
Alignment:
| Q |
110 |
catccttttatggatctgttatatcattccttactttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggt |
197 |
Q |
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| T |
25928787 |
catccttttatggatccatgatatcattccttatttt---gtacagggaaatgttgttcttgtttttcaaccagccgaagaaggaggt |
25928703 |
T |
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