View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_13 (Length: 476)
Name: NF14784_high_13
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 4583476 - 4583021
Alignment:
| Q |
19 |
actcccactcatattttacttcaaaccacatgatcaattcacaaacatgttcagcaatgataattcctccataatcagaccaaannnnnnngccctatac |
118 |
Q |
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| T |
4583476 |
actcccactcatattttacttcaaaccacatgatcaattcaaaaacatgttcagcaatgataattcctccataatcaaaccaaatttttttgccctatac |
4583377 |
T |
|
| Q |
119 |
ttaggttttggtttacttgtagaaggggtttacttgatgtattcatatggacttgtatatcttcctctttccactttttctctaatatgctcaactgaat |
218 |
Q |
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| T |
4583376 |
ttaggttttggtttacttgtagaaggggtttacttgatgtattcatatgggcttgtatatcttcctctttccactttttctctaatatgctcaactgaat |
4583277 |
T |
|
| Q |
219 |
tagccttcaatgcattattctctttcttcttgaattctcaaaggtttacagcattaatattcaattctgtattcctccttaccatatcaacttcattgct |
318 |
Q |
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| T |
4583276 |
tagccttcaatgcattattctctttcttcttgaattctcaaaggtttacagcattaatattcaattctgtattcctccttaccatatcaacttcattgct |
4583177 |
T |
|
| Q |
319 |
tgccgtcgattccatttctgaagactcaacggatcttcatagagaaaaatacatacttggtttccgcttcactctttgtgcatgtgctgcatttgcatta |
418 |
Q |
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| T |
4583176 |
tgccgtcgattccatttctgaagactcaacggatcttcatagagaaaaatacatacttggtttcctcttcactctttgtgcatgtgctgcatttgcatta |
4583077 |
T |
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| Q |
419 |
tatctctcccttgtgcaatattcttttgagaaaattataaaaagagaaacattttc |
474 |
Q |
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| T |
4583076 |
tatctcgcccttgtgcaatattcttttgagaaaattataaaaagagaaacattttc |
4583021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 289
Target Start/End: Original strand, 40838761 - 40838898
Alignment:
| Q |
152 |
ttgatgtattcatatggacttgtatatcttcctctttccactttttctctaatatgctcaactgaattagccttcaatgcattattctctttcttcttga |
251 |
Q |
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||||||||||| |||||||| |||||||| | |||||||| | |||| || |||| |||| ||||||||||||||||| |||| |||| ||| | | |
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| T |
40838761 |
ttgatgtattccaatggacttctatatctttcactttccacctattctttactatgtgcaacacaattagccttcaatgcagtattttcttatttcctta |
40838860 |
T |
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| Q |
252 |
attctcaaaggtttacagcattaatattcaattctgta |
289 |
Q |
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|||| |||| ||| |||||||| ||||||||||||||| |
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| T |
40838861 |
attcccaaaagttcacagcattcatattcaattctgta |
40838898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 474
Target Start/End: Original strand, 40838984 - 40839086
Alignment:
| Q |
372 |
tacttggtttccgcttcactctttgtgcatgtgctgcatttgcattatatctctcccttgtgcaatattcttttgagaaaattataaaaagagaaacatt |
471 |
Q |
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||||||| ||| |||||| ||| |||||| || | ||||| | |||||||| ||||||||||| ||||||||| ||| |||||||||| ||||| || |
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| T |
40838984 |
tacttggattcgtcttcacccttggtgcatctgttacattttctttatatctttcccttgtgcagctttcttttgacaaagttataaaaagcgaaacctt |
40839083 |
T |
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| Q |
472 |
ttc |
474 |
Q |
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||| |
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| T |
40839084 |
ttc |
40839086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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