View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_21 (Length: 439)
Name: NF14784_high_21
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 15288162 - 15288361
Alignment:
| Q |
15 |
gagatgaattaattaccagcaggacatgaatttgttttctcccattttgatttgcaaatggatgaatcgtaaccaagagattgaagcttttcagcaacga |
114 |
Q |
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| T |
15288162 |
gagatgaattaattaccagcaggacatgaatttgttttctcccattttgatttgcaaatggatgaatcgtaaccaagagattgaagcttttcagcaacga |
15288261 |
T |
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| Q |
115 |
tcttaatcaaatcttctttccttttgtaaattttgctattcttctcaacaattttcgttgcatcggatagtaaattccgttcttcaacacttgcacaagg |
214 |
Q |
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| T |
15288262 |
tcttaatcaaatcttctttccttttgtaaattttgctattcttctcaacaatttttgttgcatcggatagtaaattccgttcttcaacacttacacaagg |
15288361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 294 - 420
Target Start/End: Original strand, 15288441 - 15288567
Alignment:
| Q |
294 |
gattttggttcaagtctttttaccttgagtgagtcagttgaatcggtgactgattgatgtgtatagccgttgaaatcgaaatcatcttcgtcggagctgt |
393 |
Q |
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| T |
15288441 |
gattttggttcaagtttttttaccttgagtgagtcagttgaatcggtgactgattcatgtgtatagccgttgaaatcgaaatcatcttcgtcggagctgt |
15288540 |
T |
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| Q |
394 |
tagcgttgaagcagttacagcggttac |
420 |
Q |
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| T |
15288541 |
tagcgttgaagcagttacagcggttac |
15288567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 34098295 - 34098365
Alignment:
| Q |
45 |
tttgttttctcccattttgatttgcaaatggatgaatcgtaaccaagagattgaagcttttcagcaacgat |
115 |
Q |
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| T |
34098295 |
tttgttttatgccatttcgatttgcaaatcgaagaatcgtaacctagagattgaagattttcagcaacgat |
34098365 |
T |
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