View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_30 (Length: 403)
Name: NF14784_high_30
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 28343004 - 28343419
Alignment:
| Q |
1 |
tatattgatttcaacatatacacaaatcacattgaaagaacataacccccatttggatacacaattcaacatagcatgttattcacaaataaagcatata |
100 |
Q |
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| T |
28343004 |
tatattcatttcaacatatacacaaatcacattgaaagaacataacccccatttggatacacaattcaacatagcatgttattcacaaataaaacatata |
28343103 |
T |
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| Q |
101 |
accaacctacataattaagtaaaaaccgtgttgctagatagtcccttaattgccccgacggcgttttaaaacgcaagacaacttatgctacacgagtaaa |
200 |
Q |
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| T |
28343104 |
accaacctacataattaagtaaaaaccatgttgctagatagtcccttaattgccccgacggcgttttaaaacgcaagacaacttatgctacacgagtaaa |
28343203 |
T |
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| Q |
201 |
tccaattttgattgttactatcattacttcttgattttatgagtaaat----------cca--at-ttagattctccttccaattcnnnnnnnnnnnnga |
287 |
Q |
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| T |
28343204 |
tccaattttgattgttactatcattacttcttgattttatgagcaaatattacaacgaccacgatcttagattctccctccaattcaaaatagaaaaaga |
28343303 |
T |
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| Q |
288 |
gtaattaggatataaccgtttcagtgttttattcaactcctaacaggccagatcatacgtagtttccttagaacttatttcaattaatgtcttaaccctt |
387 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
28343304 |
gtaattagaatataaccgtttcagtgttttattcaactcctaacaggccagatcatacgtagtttccttagaacttatttcaattaatttcttaacactt |
28343403 |
T |
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| Q |
388 |
tacatacttctatcaa |
403 |
Q |
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| T |
28343404 |
tacatacttcaatcaa |
28343419 |
T |
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