View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_34 (Length: 395)
Name: NF14784_high_34
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 31041554 - 31041193
Alignment:
| Q |
15 |
cataggttcatcaagtttaacaagaaaattaacctaagaatagattttcaatttcattgtcttacatcaacaagaagcacatttcgttgatgaacctatg |
114 |
Q |
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| T |
31041554 |
cataggttcatcaggtttaacaagaaaattaacctaagaatagattttcaatttcattgtcttacatcaacaagaagcgcatttcgttgatgaacctatg |
31041455 |
T |
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| Q |
115 |
tgctaagttccaacttgcttgtcataggttcatcaaatttcaaagcacatttcatttcggagtctaagttaacaacaatttgatgtttagatcttgtttc |
214 |
Q |
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| T |
31041454 |
tgctc--ttccaacttgcttgtcataggttcatcaaatttcaaagcacatttcatttcggagtctaagttaacaacaatttgatgtttagatcttgtttc |
31041357 |
T |
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| Q |
215 |
tcctaggaaggttcccattgttacgcccacagtcatagcacacctatgtactattttaaagtagattgtactattgtttgtgtcacaagaannnnnnnat |
314 |
Q |
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| T |
31041356 |
tcctaggaaggttcccattgttacgcccacagtcatagcacacctatgtactattttaaagtagattgtactattgtttgtgtcacaagaatttttttat |
31041257 |
T |
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| Q |
315 |
atataaataactatatattaaggattataaccaatcacaaggggtgaaggtatgtattaagtat |
378 |
Q |
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| T |
31041256 |
atataaataactatatattaaggattataaccaatcacaaggggtgaaggtatgtattaagtat |
31041193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 83 - 258
Target Start/End: Complemental strand, 31067412 - 31067240
Alignment:
| Q |
83 |
aacaagaagcacatttcgttgatgaacctatgtgctaagttccaacttgcttgtcataggttcatcaaatttcaaagcacatttcatttcggagtctaag |
182 |
Q |
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| T |
31067412 |
aacaagaagtacattttattgatgaacctatgcgctc--ttccaatttgcttgtcataggttcctcaaatttcaaagcacatttcatttcagagtcaaag |
31067315 |
T |
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| Q |
183 |
ttaacaacaatttgatgtttagatcttgtttctcctaggaaggttcccattgttacgcccacagtcatagcacacc |
258 |
Q |
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| T |
31067314 |
ttaacaacaatttcatgtttagatcttgtttctcctaggaaggttcccattgttacg-ccacagtcatagcgcacc |
31067240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 31098525 - 31098644
Alignment:
| Q |
139 |
taggttcatcaaatttcaaagcacatttcatttcggagtctaa-gttaacaacaatttgatgtttagatcttgtttctcctaggaaggttcccattgtta |
237 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |
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| T |
31098525 |
taggttcatcaaatttcaaagcacatttcatttcagagtcaaaagttaacaacaatttcatgtttagatcttgtttctcctaggaagatttccattgtta |
31098624 |
T |
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| Q |
238 |
cgcccacagtcatagcacacc |
258 |
Q |
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| T |
31098625 |
cg-ccacattcatagcgcacc |
31098644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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