View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_36 (Length: 385)
Name: NF14784_high_36
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_36 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 197 - 385
Target Start/End: Original strand, 3804773 - 3804961
Alignment:
| Q |
197 |
ctatcacattgaaaatataagatttcaacataataaataataaattcatttaaagaacatatctttattcatggtgattgatattagatgcaacaatcct |
296 |
Q |
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| T |
3804773 |
ctatcacattgaaaatataagatttcaacataataaataataaattcatttaaagaacatatctttattcatggtgattgatattagatgcaacaatcct |
3804872 |
T |
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| Q |
297 |
ccgaatttcaatttatctctattccgtttgttctttctttcgagtttcgacccgttcttgctaacaatatggtagagaagttttatgga |
385 |
Q |
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| T |
3804873 |
ccgaatttcaatttatctctttttcatttgtcctttctttcgagtttcgacccgttcttgctaacgatatggtagagaagttttatgga |
3804961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 3804592 - 3804689
Alignment:
| Q |
15 |
catagggggtcaaaagtgcgtttaattaagcctaattactatttcatgttctttgacttggtcatgtatgtctttgtttgatatccgtaagtttgtta |
112 |
Q |
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| T |
3804592 |
catagggggtcaaaagtgcgtttaattaagcctaattactatttcatgttctttgacttggccatgtacgtctttgtttgatatccgtaagtttgtta |
3804689 |
T |
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