View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_4 (Length: 601)
Name: NF14784_high_4
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 455
Target Start/End: Complemental strand, 8945133 - 8944689
Alignment:
| Q |
14 |
agaagaagatcatgaaggcaactataagcgttgcacaattcaaagtcaaaccaaaattatgtttcattatcccgagtttttggcccgtatgagatttgat |
113 |
Q |
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| T |
8945133 |
agaagaagatcatgaaggcaactataagcgttgcacaattcaaagtcaaaccaaaattatgtttcattatcccgagtttttggcccgtatgagatttgat |
8945034 |
T |
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| Q |
114 |
tggatagaaggtaattcgtgaaaagttcgttgtaaaacgtctcgctgcatgtagaaattgctgannnnnnnn--ccccttatgtccattgttgagatttt |
211 |
Q |
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| T |
8945033 |
tggatagaaggtaattcgtgaaaagttcgttgtaaaacgtctcgctgcatgtagacattgctgattttttttttccccttatgtccattgttgagatttt |
8944934 |
T |
|
| Q |
212 |
aactaatttatgcaaggnnnnnnncagttaactagtgtaattagcatataaataagtatattattaaattatttataagataacaaattggtggtctggt |
311 |
Q |
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| T |
8944933 |
aaccaatttatgcaaggaaaaaaacagttaactagtgtaattagcatataaataagtatattattaaattatttataagataacaaattggtggtctggt |
8944834 |
T |
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| Q |
312 |
gttgtaatcgtttgttttaagaatttgttgtttgatcatacttcagttgatagggacaatatggtatacatgagttggattcgaacttcagattcttcat |
411 |
Q |
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| T |
8944833 |
gttgtaattgtttgttttaagaatttgtcgtttgatcatacttcagctgacagggacaatgtggtataaatgagttggattcgaacttcagattctccat |
8944734 |
T |
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| Q |
412 |
ttatttatctttaaggatgaattttaatcctct-aaattacttga |
455 |
Q |
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| T |
8944733 |
ttatttatctttaagaatgaatttcaatcctctaaaattacttga |
8944689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 494 - 537
Target Start/End: Complemental strand, 8944642 - 8944599
Alignment:
| Q |
494 |
tcatttcaccatttcaaaagcatagcttttatagcaatgaatgc |
537 |
Q |
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| T |
8944642 |
tcatttcaccatttcaaaagcatagtttttatagcaatgaatgc |
8944599 |
T |
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