View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_42 (Length: 353)
Name: NF14784_high_42
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 11544924 - 11544587
Alignment:
| Q |
1 |
tatattttttcgtaatcttgattaattcagagacta----gataacgtttgacatattcaaggaccaaagctacagtatactctcaattataaagcataa |
96 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
11544924 |
tatattttttcgtaatcttgattaattcagagactatatagataacgtttgacatattcaaggaccaaagctacagtttactctcaattataaagcaaaa |
11544825 |
T |
|
| Q |
97 |
gatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11544824 |
gatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttcagagcaggcagagggagccaaagggtggtagccgcagtaacaatagtgc |
11544725 |
T |
|
| Q |
197 |
catttggctggcttgtatcatcgtccatggtgctgcgaaaagagactctaacaccaccaatgctagcaagagttaaatggttcaatttcaattgaccagg |
296 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11544724 |
catttggctggcttgtatcatcgtccgtggtgctgcgaaaagagactctaataccaccaatgctagcaagagttaaatggttcaattccaattgaccagg |
11544625 |
T |
|
| Q |
297 |
cattgttaaactttcacaaaacattttgaccattctct |
334 |
Q |
| |
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| T |
11544624 |
cattgttaaactttcacaaaacattttgaccattctct |
11544587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 35 - 332
Target Start/End: Complemental strand, 11558302 - 11558005
Alignment:
| Q |
35 |
tagataacgtttgacatattcaaggaccaaagctacagtatactctcaattataaagcataagatgttacctgtgatcgctttgtaggatctttgaggaa |
134 |
Q |
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||||||||||||||||||| ||||||||||| | ||| | |||||||||||||||| || | |||||||||||||||| |||||||||||||||||||| |
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| T |
11558302 |
tagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctgtgatcgttttgtaggatctttgaggaa |
11558203 |
T |
|
| Q |
135 |
ttcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggctggcttgtatcatcgtccatggtgctgcga |
234 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||| |
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| T |
11558202 |
ttcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaacagtgccatttggctggcttgcatcatcgtcggtggttgcgcga |
11558103 |
T |
|
| Q |
235 |
aaagagactctaacaccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgttaaactttcacaaaacattttgaccattct |
332 |
Q |
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| T |
11558102 |
atagagactctaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgttaagcattcacaaaacatcttcaccattct |
11558005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 105 - 332
Target Start/End: Original strand, 12064193 - 12064421
Alignment:
| Q |
105 |
ctgtgatcgctttgtaggatctttgaggaattcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggc |
204 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |
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| T |
12064193 |
ctgtgatcgttttgtaggatctttgagcaattcaaaaactttctgagcaggcagagggagccaaagagtggtagcagcagttacaacagtgccatttggc |
12064292 |
T |
|
| Q |
205 |
tggcttgtatcatcgtccatggtgctgcgaaaagagactct-aacaccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgtt |
303 |
Q |
| |
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||||||||||||| ||| |||| ||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
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| T |
12064293 |
tggcttgtatcattgtcggtggtatcgcgaagagagactctaaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgtt |
12064392 |
T |
|
| Q |
304 |
aaactttcacaaaacattttgaccattct |
332 |
Q |
| |
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|| | |||||||||||||||||||||||| |
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|
| T |
12064393 |
aagcattcacaaaacattttgaccattct |
12064421 |
T |
|
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