View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_52 (Length: 320)
Name: NF14784_high_52
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 15251430 - 15251145
Alignment:
| Q |
8 |
tcgagtgagatgaaattctggttggcgagagattcattgacgatgaacttgacggggatgttccatgtggggtttcttccagcagtgttacgatggatgt |
107 |
Q |
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| T |
15251430 |
tcgagagagaggcaattctggttggcgagagattcattgacgatgaacttgacggggatgttccatgtggggtttcttccagcagtgttacgatggatgt |
15251331 |
T |
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| Q |
108 |
aggcggtggtggtttgtgggttgatttggtcgccggagattgaaacaacggcatataccgacatcttggagaaaagattaaaacctttgagatcttttgc |
207 |
Q |
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| T |
15251330 |
aggtggtggtggtttgtgggttgatttggtcgccggagattgaaacaacggcatataccgacgtcttggagaaaagattaaaacctttgagatcttttgc |
15251231 |
T |
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| Q |
208 |
acatattatgttaagttctaaggttctgtatttcatactcatcatgcgacagtgagatggattttatgttgttctttttagggttttaagaatatact |
305 |
Q |
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| T |
15251230 |
acatattatgttaagttctaaggttctgt------------tgatgcgacagtgagatggattttatgttgttctttctagggttttaagaatatact |
15251145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 15275549 - 15275347
Alignment:
| Q |
32 |
gcgagagattcattgacgatgaacttgacggggatgttccatgtggggtttcttccagcagtgttacgatggatgtaggcggtggtggtttgtgggttga |
131 |
Q |
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| T |
15275549 |
gcgagagattcgttgacagcgaacttgaccgggatgttccatgtggggtttcttccagca---tgacggtggatgtgggtggtggtgatttgtgggttga |
15275453 |
T |
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| Q |
132 |
tttggtcgccggagattgaaacaacggcatataccgacatcttggagaaaagattaaaacctttgagatcttttgcacatattatgttaagttctaaggt |
231 |
Q |
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| T |
15275452 |
gtgggtcgccgaggattgaaacaatggcgtatacggacatctgggagaaaagattaacatcttttagatcttttgcggaaataatgtcgagttctaaggt |
15275353 |
T |
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| Q |
232 |
tctgta |
237 |
Q |
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|||||| |
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| T |
15275352 |
tctgta |
15275347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 14431318 - 14431532
Alignment:
| Q |
22 |
attctggttggcgagagattcattgacgatgaacttgacggggatgttccatgtggggtttcttccagcagtgttacgatggatgtaggcggtggtggtt |
121 |
Q |
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||||||||| |||||||| || |||| | |||| |||||||||| ||||||||| ||| || ||||| | || |||||| ||| || ||||| ||| |
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| T |
14431318 |
attctggttagcgagagaatcgttgatggtgaatttgacggggaagttccatgtagggcttgttccacc---gtcacgatgcctgtgggtggtggcagtt |
14431414 |
T |
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| Q |
122 |
tgtgggttgatttggtcgccggagattgaaacaacggcatataccgacatcttggagaaaagattaaaacctttgagatcttttgcacatattatgttaa |
221 |
Q |
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| T |
14431415 |
tgtgggtttaatggatcgcctgagattgaaacgacggcgtaaacgtccatcttggagaaaagattaacatttttgagatctttagcggatatgatgttga |
14431514 |
T |
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| Q |
222 |
gttctaaggttctgtatt |
239 |
Q |
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| T |
14431515 |
gttctaaggttctatatt |
14431532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 237
Target Start/End: Complemental strand, 15263913 - 15263715
Alignment:
| Q |
33 |
cgagagattcattgacgatgaacttgacggggatgttccatgtggggtttcttccagcagtgttacgatggatgtaggcggtggtggtttgtgggttgat |
132 |
Q |
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| T |
15263913 |
cgagagattccttgacggcgaacttgatggggatgttccatgtagcgtttcttctagc---gtgacagtggatgtggg---tggtgatttgtgggtcgag |
15263820 |
T |
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| Q |
133 |
ttggtcgccggagattgaaacaacggcatataccgacatcttggagaaaagattaaaacctttgagatcttttgcacatattatgttaagttctaaggtt |
232 |
Q |
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| T |
15263819 |
tgggtcaccgaggattgaaacaatggcgtatacagatatttgtgggaaaatattaacatctttgagatcttttgcggaaatcatgttgagttctaaggtt |
15263720 |
T |
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