View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_high_6 (Length: 541)
Name: NF14784_high_6
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 533
Target Start/End: Complemental strand, 6292625 - 6292109
Alignment:
| Q |
17 |
agaaattcccacattataagtcatagattcatcaggtctaaaaagaccataatttctttctgaggttggtccaggtttcaaatcttcattaaacaatgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6292625 |
agaaattcccacattataagtcatagattcatcaggtctaaaaagaccataatttctttctgaggttggtccaggtttcaaatcttcattaaacaatgca |
6292526 |
T |
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| Q |
117 |
aacaagtaaacttccaacctcattctaggattcaaaggtgtcccttgattcgccatttgtctcttcaacaagtttctattataagttgcagcattttgcg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6292525 |
aacaagtaaacttccaacctcattctaggattcaaaggtgtcccttgattcgccatttgtctcttcaacaagtttctattataagttgcagcattttgcg |
6292426 |
T |
|
| Q |
217 |
gagaagcaccaacctcattcgggtcgcctctagaaggccaacctgtctcggataccctaacttcaatccctttaaatcccattttagctatggaaaatga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6292425 |
gagaagcaccaacctcattcgggtcgcctctagaaggccaacccgtctcggataccctaacttcaatccctttaaatcccattttagctatggaaaatga |
6292326 |
T |
|
| Q |
317 |
tacagcatcagccatagcataaagcatgttatcataatgtagatttgtggtaggatcaaccattccttgactaggattaaataaaacatagtccaaagga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6292325 |
tacagcatcagccatagcataaagcatgttatcataatgtagatttgtggtaggatcaaccattccttgactaggattaaataaaacatagtccaaagga |
6292226 |
T |
|
| Q |
417 |
attgaatctggatcatctttatatgcaaagtaagggtaagcattgatccaaaaaggtgcttttgttgtttgcaagaagttcaaaaattggtacatcatgc |
516 |
Q |
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| T |
6292225 |
attgaatctggatcatctttatatgcaaagtaagggtaagcattgatccaaaaaggtgcttttgttgtttgcaagaagttcaaaaattggtacatcatgc |
6292126 |
T |
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| Q |
517 |
tagagatttcgcctttg |
533 |
Q |
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||||||||||||||||| |
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| T |
6292125 |
tagagatttcgcctttg |
6292109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 265
Target Start/End: Complemental strand, 36381911 - 36381823
Alignment:
| Q |
177 |
ctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcgggtcgcctctagaaggccaacctgtctc |
265 |
Q |
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| T |
36381911 |
ctcttcaacaaattactatgataaatttctgcattctgtagtgaagctccaacctcatccggatcacctttagaaggccaacctgtctc |
36381823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 504
Target Start/End: Original strand, 32856211 - 32856688
Alignment:
| Q |
27 |
acattataagtcatagattcatcaggtctaaaaagaccataatttctttctgaggttggtccaggtttcaaatcttcattaaacaatgcaaacaagtaaa |
126 |
Q |
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||||| ||||||||| ||||||||| ||| | |||||| || || ||||||||||||||| |||| || ||||||||| ||||||||||| || |
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| T |
32856211 |
acattgtaagtcatactttcatcaggctcaaataaaccatagttcctctctgaggttggtccattcttcatattttcattaaataatgcaaacaaatatg |
32856310 |
T |
|
| Q |
127 |
cttccaacctcattctaggattcaaaggtgtcccttgattcgccatttgtctcttcaacaagtttctattataagttgcagcattttgcggagaagcacc |
226 |
Q |
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|||||| |||||||||||||||||||||||||||| |||| |||||||||| |||| || || | |||||| || ||||||||| | || ||||| |
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| T |
32856311 |
attccaatctcattctaggattcaaaggtgtcccttcattcttcatttgtctcctcaataaattcttgttataaatttcagcatttttcaatgatgcacc |
32856410 |
T |
|
| Q |
227 |
aacctcattcgggtcgcctctagaaggccaacctgtctcggataccctaacttcaatccctttaaatcccattttagctatggaaaatgatacagcatca |
326 |
Q |
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|| |||| | ||| ||| || |||||||| ||||| || ||||||||||| ||||| ||||| || | |||||| || | ||||| |||||||| |
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| T |
32856411 |
aatttcatcagagtcacctttacttggccaaccagtctcagaaaccctaacttctatcccattaaaacctaatttagcaattgcaaatgtaacagcatct |
32856510 |
T |
|
| Q |
327 |
gccatagcataaagcatgttatcataatgtagatttgtggtaggatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctg |
426 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||||| |||| ||| || | |
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| T |
32856511 |
accatagcataaagcatgttatcataatgtaaatttgtattaggatcaaccattccttggttaggattaaataatacatagtctaaagatatttgattag |
32856610 |
T |
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| Q |
427 |
gatcatctttatatgcaaagtaagggtaagcattgatccaaaaaggtgcttttgttgtttgcaagaagttcaaaaatt |
504 |
Q |
| |
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| |||| ||||| ||||| ||||| |||||||||| |||||| |||| ||||||| || ||| ||||||||||||| |
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| T |
32856611 |
ggtcattcttataagcaaaataaggataagcattgacccaaaagggtgattttgtttttgacaaaaagttcaaaaatt |
32856688 |
T |
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