View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14784_high_60 (Length: 299)
Name: NF14784_high_60
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_60 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 31459831 - 31459568
Alignment:
| Q |
17 |
aatatacaccattggtccaacttacatagtttttagattttccaattcaccgatgtagtctggaataggaccagtgattaagcaatttctcaattccctg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31459831 |
aatatacaccattggtccaacttacatagtttttagattttccaattcaccaatgtagtctggaataggaccagtgattaagcaatttctcaattccctg |
31459732 |
T |
|
| Q |
117 |
agttaccgcaatgaaccagttaataaatcataaatgagttacacaattcttcatatgtaggcaggaagaaaaggtttcaagttttccactcacagtcttt |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31459731 |
agttaccgcaataaaccagttaataaatcataaatgagttacacaattcttcatatgtaggcaggaagaagaggtttcaagttttccactcacagtcttt |
31459632 |
T |
|
| Q |
217 |
gcatgcgtttcaaatccttcaaatcgggaaatgtcatcgttgtgtttcccttcaagtcagatat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31459631 |
gcatgcgtttcaaatccttcaaatcgggaaatgtcatcgttgtgtttcccttcaagtcagatat |
31459568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 20059119 - 20059064
Alignment:
| Q |
62 |
ttcaccgatgtagtctggaataggaccagtgattaagcaatttctcaattccctga |
117 |
Q |
| |
|
|||||| ||||| || ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
20059119 |
ttcaccaatgtaatcaggaataggacctgtgattaagcaatttctcaactccctga |
20059064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University