View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_high_7 (Length: 512)

Name: NF14784_high_7
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_high_7
NF14784_high_7
[»] chr8 (1 HSPs)
chr8 (18-508)||(20140423-20140913)
[»] chr7 (2 HSPs)
chr7 (18-508)||(44317838-44318328)
chr7 (428-508)||(29632271-29632351)
[»] chr1 (1 HSPs)
chr1 (428-508)||(16320370-16320450)


Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 20140913 - 20140423
Alignment:
Q  18 atcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggttaatgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20140913 atcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggttaatgg 20140814  T
Q  118 gtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgattgtttatacgtt 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20140813 gtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgattgtttatacgtt 20140714  T
Q  218 tgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaaacacgtgtttggaagactg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20140713 tgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaaacacgtgtttggaagactg 20140614  T
Q  318 tgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagagg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20140613 tgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagagg 20140514  T
Q  418 atttggttatcatgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg 508  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20140513 atttggttatcatgatgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg 20140423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 44318328 - 44317838
Alignment:
Q  18 atcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggttaatgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44318328 atcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggttaatgg 44318229  T
Q  118 gtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgattgtttatacgtt 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44318228 gtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgattgtttatacgtt 44318129  T
Q  218 tgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaaacacgtgtttggaagactg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44318128 tgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaaacacgtgtttggaagactg 44318029  T
Q  318 tgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagagg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44318028 tgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcactctgctttttgtttgaggagagg 44317929  T
Q  418 atttggttatcatgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg 508  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44317928 atttggttatcatgatgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg 44317838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 428 - 508
Target Start/End: Complemental strand, 29632351 - 29632271
Alignment:
Q  428 catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg 508  Q
    ||||||||| |||||||||||||| |  ||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  29632351 catgatgatcgtgaacctgttgtttgtacttatgtttgtgacaatggtcatgtttctggtgcttggactgatttacctatg 29632271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 508
Target Start/End: Complemental strand, 16320450 - 16320370
Alignment:
Q  428 catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg 508  Q
    ||||||||||||||||||| |||| | |||||||||| |||||||| ||  |||||||||| ||||||||||  |||||||    
T  16320450 catgatgatggtgaacctgatgtttgtgcttatgtttctgataatgatcgagtttctggtgattggactgatgagcctatg 16320370  T

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