View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14784_high_9 (Length: 490)
Name: NF14784_high_9
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_9 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 45318458 - 45317967
Alignment:
| Q |
1 |
tcttctcatcattttcagcctcgattttctcaggctccatctctgcctggttaacgataattttttcatactccacctggtttatagtaggannnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45318458 |
tcttctcatcattttcagcctcaattttctcaggctccgtctctgcctggttaacgataattttttcatactccacctggtttatagtaggatttttttt |
45318359 |
T |
|
| Q |
101 |
cttatcatcatcttcagcctcaattttctcagactccacctggtaaacaataacttcctctgccatcaatgatcaaggatgaagcaaaaatttcaaagac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45318358 |
cttatcatcatcttcagcctcaattttctcagactccacctggtaaacaataatttcctctgccatcaatgatcaaggatgaagcaaaaatttcaaagac |
45318259 |
T |
|
| Q |
201 |
tcctgcaacagataagaatcctttcagatatgtacagcaaggtggaggggagaacaagaatgctaattaaaacagcatgaaaagtctacagc--annnnn |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
45318258 |
tcctgcaacagataagaatcctttcagatatgtacagcaaggtggaggggagaacaagaatgctaattaaaacagcatgaaaagtctacaacatattttt |
45318159 |
T |
|
| Q |
299 |
nnnnnnggaatctagttcattagaaaggtgcaaagattctaatttcaacacatgcgttagatatatgtatgggtagggattagagagggagggtaaatct |
398 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45318158 |
ttttttggaatctagttcattataaaggtgcaaagattctaatttcaacacatgagttagatatatgtatgggtagggattagagagggagggtaaatct |
45318059 |
T |
|
| Q |
399 |
aggattatcttgacacattggtagtaacactacttgtgcagtgacatgaatgtgctggaattttggttcgaaatgtcccaaaaatttgagcc |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45318058 |
aggattatcttgacacattggtagtaacactacttgtgcagtgacatgaatgtgctggaattttggtttgaaatgtcccaaaaatttgagcc |
45317967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 45318757 - 45318708
Alignment:
| Q |
104 |
atcatcatcttcagcctcaattttctcagactccacctggtaaacaataa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
45318757 |
atcatcatcttcagcctcaattttctcagtctctacctggtgaacaataa |
45318708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 45318826 - 45318783
Alignment:
| Q |
101 |
cttatcatcatcttcagcctcaattttctcagactccacctggt |
144 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
45318826 |
cttatcatcatattcagcctcaattttctcaggctccacctggt |
45318783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 45318547 - 45318502
Alignment:
| Q |
104 |
atcatcatcttcagcctcaattttctcagactccacctggtaaaca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
45318547 |
atcatcatcttcagcctcaattttctcaggctctacctggttaaca |
45318502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University