View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14784_high_93 (Length: 239)
Name: NF14784_high_93
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_high_93 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 12660856 - 12660630
Alignment:
| Q |
1 |
ccattcagtaggcgtcatgacatcgacacttgttgttaatacatttgggaatcataccaaactcacacatactttctggacaatcaaagtggttttgaca |
100 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12660856 |
ccatttagtaggcctcatgacattgacacttgtagctaatacatctgcgaatcataccaaactcacacatactttctggacaatcaaagtcgttttgaca |
12660757 |
T |
|
| Q |
101 |
ggaannnnnnnctgtgattgcaataaga---tattattgttagtaattaaaagggataaaatattgtgaaagatgtaatgaagaaaagtttaaaagaatt |
197 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12660756 |
ggaaattttttctgtgattgcaataagaagatattactgttagtaattaaaagggataaaatattgtgaaagatgtaatgaagaaaagtttaaaagaatt |
12660657 |
T |
|
| Q |
198 |
aaaagaatggcataccataaccatttg |
224 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
12660656 |
aaaagaatggcataccataaccgtttg |
12660630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University