View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_1 (Length: 728)
Name: NF14784_low_1
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 406 - 710
Target Start/End: Complemental strand, 32423852 - 32423549
Alignment:
| Q |
406 |
agcaggcaaactattgtgaggaacattaaatcaccctcccatagtattcttaatgaataaatgtcaccacattgcatctatacaagagtttcataaccct |
505 |
Q |
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| T |
32423852 |
agcaggcaaactattgtgaggaacattaaatcaccctcccatagtattcttaatgaataaatgtcaccacattgcatctatataagagtttcataaccct |
32423753 |
T |
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| Q |
506 |
catccttaagtacaagaatctgtcatcgccaaaatagtttcatccgataataacaaaagaccaaaagccaaccaaatcaaactctttctttctgaggtga |
605 |
Q |
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| T |
32423752 |
catccttaagtacaggaatctgtcatcgccaaaatagtttcatccgataataac-aaagaccaaaagccaatcaaatcaaactctttctttctgaggtga |
32423654 |
T |
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| Q |
606 |
ttaatgaggagcgaagagcattggtcagaagaagactcattaccgatgacacactttttgcaacgaagtgctggatatattacccttcacaaaattggta |
705 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |
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| T |
32423653 |
ttaatgaggagcgaagagcattggtcagaagaagacttattaccgatgacacactttttgcaatgaagtgctggatacattacccttcacaaatttggta |
32423554 |
T |
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| Q |
706 |
tatgt |
710 |
Q |
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||||| |
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| T |
32423553 |
tatgt |
32423549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 172 - 391
Target Start/End: Complemental strand, 32424055 - 32423840
Alignment:
| Q |
172 |
aatcaaaacaacataaagtgtgaaacatagtaaaggatttgccttgttcatcacgaaatagattctacgcagttatgtgttaacgcagtaactgataagg |
271 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
32424055 |
aatcaaaacaacataaagtgtgaaacatagtaaagg----gccttgttcatcacgaaatagattctacgcagttatgtgttaacgcattaaccgataagg |
32423960 |
T |
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| Q |
272 |
accgttcgatcaaaaataaatagttaaaattgaaattatatgaaattgttagttcatttttctgtggccgagatcgcttactacgtaaaaatgcatagag |
371 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32423959 |
accgttcgatcaaaaatgaatggttaaaattgaaattatatgaaattgttagttcatttttctgtggccgagatcgcctactacgtaaaaatgcatagag |
32423860 |
T |
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| Q |
372 |
cagttatagcaggcaaacta |
391 |
Q |
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| T |
32423859 |
cagttatagcaggcaaacta |
32423840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 32424206 - 32424072
Alignment:
| Q |
13 |
gagagaagaagggagttagggttttaggaatgaaacgagtgatgatttggttcgccatggtatgtgtatgtgagtggtgagtgaaggaacgaaatgaaag |
112 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424206 |
gagagaagaagggagttagggttttaggaatgacaagagtgatgatttggttcgccatggtatgtgtatgtgagtggtgagtgaaggaacgaaatgaaag |
32424107 |
T |
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| Q |
113 |
aagttgaaatagagaatgagtatggtttagggttt |
147 |
Q |
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| T |
32424106 |
aagttgaaatagagaatgagtagggtttagggttt |
32424072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 1542307 - 1542250
Alignment:
| Q |
13 |
gagagaagaagggagttagggttttaggaatgaaacgagtgatgatttggttcgccat |
70 |
Q |
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| T |
1542307 |
gagagaagaagggagttagggttttaggaatgacacgagtgatgatttggttcgccat |
1542250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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