View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_101 (Length: 238)

Name: NF14784_low_101
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_101
NF14784_low_101
[»] chr5 (10 HSPs)
chr5 (19-238)||(37388177-37388396)
chr5 (19-71)||(37370241-37370293)
chr5 (24-71)||(37395640-37395687)
chr5 (24-71)||(37535467-37535514)
chr5 (24-71)||(37596722-37596769)
chr5 (171-238)||(41653942-41654009)
chr5 (24-71)||(37642329-37642376)
chr5 (24-71)||(37644582-37644629)
chr5 (24-71)||(37720416-37720463)
chr5 (24-71)||(37826226-37826273)
[»] chr6 (3 HSPs)
chr6 (102-238)||(17190383-17190520)
chr6 (120-238)||(12697232-12697350)
chr6 (157-227)||(9375576-9375646)
[»] chr7 (3 HSPs)
chr7 (103-222)||(778963-779083)
chr7 (119-227)||(783801-783905)
chr7 (105-174)||(9696297-9696366)
[»] chr3 (4 HSPs)
chr3 (19-71)||(14557440-14557492)
chr3 (19-71)||(14557783-14557835)
chr3 (106-184)||(51199302-51199380)
chr3 (104-173)||(41219865-41219934)
[»] scaffold0010 (1 HSPs)
scaffold0010 (157-223)||(123423-123489)
[»] scaffold0015 (1 HSPs)
scaffold0015 (157-226)||(80948-81017)
[»] chr4 (1 HSPs)
chr4 (105-174)||(13562674-13562743)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 37388396 - 37388177
Alignment:
Q  19 ggtgtatattacaagacttgactttagccaaacgagccaagtccatgaagaaagattattgtactagcggtgagtaccatatctgatattagggtttgat 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||    
T  37388396 ggtgtatattacaagacttgactttagccaaacaagccaagtccatgaagaaagattattgtactagcggtgagtaccatatctgatatcagggttaaat 37388297  T
Q  119 ttgtattggtcatgctttaagaagatttttaaggatgatatttatagtcctctatgggcttgatttcttgtgacttaaaccccaaacaataagggcattt 218  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |||||||||||||    
T  37388296 ttgtattggtcatgcattaagaaggtttttaaggatgatatttatagtcctctataggtttgatttcttgtgacttaaaccgcaaataataagggcattt 37388197  T
Q  219 aagtctttcagctgagctct 238  Q
    |||| ||| |||||||||||    
T  37388196 aagttttttagctgagctct 37388177  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 37370293 - 37370241
Alignment:
Q  19 ggtgtatattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||||||||    
T  37370293 ggtgtatattacaagacttgactatagccaaatgagccatgtccatgaagaaa 37370241  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 37395687 - 37395640
Alignment:
Q  24 atattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||    
T  37395687 atatgacaagacttgactttagccgaatgagccaagtccatgaagaaa 37395640  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 37535467 - 37535514
Alignment:
Q  24 atattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  37535467 atattacaagacttgactttagccaaatgagacaattccatgaagaaa 37535514  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 37596722 - 37596769
Alignment:
Q  24 atattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  37596722 atattacaagacttgactttagccaaatgagacaattccatgaagaaa 37596769  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 41654009 - 41653942
Alignment:
Q  171 tatgggcttgatttcttgtgacttaaaccccaaacaataagggcatttaagtctttcagctgagctct 238  Q
    |||||||||||||| |||||||||||  |||||||||  ||||| |||||||||||| || |||||||    
T  41654009 tatgggcttgattttttgtgacttaagtcccaaacaacgagggcttttaagtctttctgccgagctct 41653942  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 37642329 - 37642376
Alignment:
Q  24 atattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  37642329 atattacaagacttggctttagccaaatgagacaattccatgaagaaa 37642376  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 37644582 - 37644629
Alignment:
Q  24 atattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  37644582 atattacaagacttggctttagccaaatgagacaattccatgaagaaa 37644629  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 37720416 - 37720463
Alignment:
Q  24 atattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||||||    
T  37720416 atattacaagacttgactctagccaaatgagacaattccatgaagaaa 37720463  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 37826226 - 37826273
Alignment:
Q  24 atattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||||||    
T  37826226 atattacaagacttgactctagccaaatgagacaattccatgaagaaa 37826273  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 17190520 - 17190383
Alignment:
Q  102 tgatattagggtttgat-ttgtattggtcatgctttaagaagatttttaaggatgatatttatagtcctctatgggcttgatttcttgtgacttaaaccc 200  Q
    ||||||||||||||  | ||||||||||||||| || ||||   | ||||||||||||||||||| | ||||||||||||||||| | |||||||| |||    
T  17190520 tgatattagggtttagtattgtattggtcatgccttgagaatgctcttaaggatgatatttatagccgtctatgggcttgatttcgtctgacttaagccc 17190421  T
Q  201 caaacaataagggcatttaagtctttcagctgagctct 238  Q
     ||||||| |||| ||| ||||||||| || |||||||    
T  17190420 aaaacaatgagggtattcaagtctttctgccgagctct 17190383  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 12697232 - 12697350
Alignment:
Q  120 tgtattggtcatgctttaagaagatttttaaggatgatatttatagtcctctatgggcttgatttcttgtgacttaaaccccaaacaataagggcattta 219  Q
    ||||||||||||||  | |||||  | | |||| || ||||||||| ||||||||||||||||||| |||||||||| ||||||  ||| ||||||||||    
T  12697232 tgtattggtcatgccctgagaaggctctcaagggtggtatttatagccctctatgggcttgatttcctgtgacttaagccccaagtaatgagggcattta 12697331  T
Q  220 agtctttcagctgagctct 238  Q
    | |||||| || |||||||    
T  12697332 aatctttctgccgagctct 12697350  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 9375576 - 9375646
Alignment:
Q  157 tatttatagtcctctatgggcttgatttcttgtgacttaaaccccaaacaataagggcatttaagtctttc 227  Q
    ||||||||| ||||||||| | |||  ||| ||||||||| ||||||  ||| ||||||||||||||||||    
T  9375576 tatttatagccctctatggacctgaactctcgtgacttaagccccaagtaatgagggcatttaagtctttc 9375646  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 778963 - 779083
Alignment:
Q  103 gatattagggtttgat-ttgtattggtcatgctttaagaagatttttaaggatgatatttatagtcctctatgggcttgatttcttgtgacttaaacccc 201  Q
    ||||||||||||| || ||||||||||||||| || |||||  | | |||| || |||||||||  ||||||||| || |||||||||||||||| ||||    
T  778963 gatattagggtttcatattgtattggtcatgcctttagaaggctctcaagggtggtatttatagctctctatgggattaatttcttgtgacttaagcccc 779062  T
Q  202 aaacaataagggcatttaagt 222  Q
    || |||| |||||||||||||    
T  779063 aagcaatgagggcatttaagt 779083  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 783801 - 783905
Alignment:
Q  119 ttgtattggtcatgctttaagaagatttttaaggatgatatttatagtcctctatgggcttgatttcttgtgacttaaaccccaaacaataagggcattt 218  Q
    ||||||||||||||| || |||||  | | |||| || |||||||||    |||||| |||||||||||||||||||| |||||| |||| |||||||||    
T  783801 ttgtattggtcatgccttgagaaggctctcaagggtggtatttatag----ctatggacttgatttcttgtgacttaagccccaagcaatgagggcattt 783896  T
Q  219 aagtctttc 227  Q
    |||||||||    
T  783897 aagtctttc 783905  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 9696297 - 9696366
Alignment:
Q  105 tattagggtttgatttgtattggtcatgctttaagaagatttttaaggatgatatttatagtcctctatg 174  Q
    ||||||||||||  |||||||||||||||||||||||| || | |||| |  ||||||||||| ||||||    
T  9696297 tattagggtttgtattgtattggtcatgctttaagaaggttctcaagggttgtatttatagtcatctatg 9696366  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 14557440 - 14557492
Alignment:
Q  19 ggtgtatattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  14557440 ggtgtatattacaagacttgactttagccaaatgagtcaagtccatgaagaaa 14557492  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 14557783 - 14557835
Alignment:
Q  19 ggtgtatattacaagacttgactttagccaaacgagccaagtccatgaagaaa 71  Q
    |||||||||||||||| ||||||| | ||||| ||||||||||||||| ||||    
T  14557783 ggtgtatattacaagatttgacttcaaccaaatgagccaagtccatgatgaaa 14557835  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 51199380 - 51199302
Alignment:
Q  106 attagggtttgatttgtattggtcatgctttaagaagatttttaaggatgatatttatagtcctctatgggcttgattt 184  Q
    |||||||||||  ||||||| ||||||| || |||||| | | |||| |  ||||||||| ||||||||||||||||||    
T  51199380 attagggtttgtattgtattcgtcatgccttgagaagactctcaagggttgtatttatagccctctatgggcttgattt 51199302  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 41219865 - 41219934
Alignment:
Q  104 atattagggtttgatttgtattggtcatgctttaagaagatttttaaggatgatatttatagtcctctat 173  Q
    |||||||||||||  ||||||||||||||| || |||||| | | |||| |  |||||||||||||||||    
T  41219865 atattagggtttgtattgtattggtcatgccttgagaagactctcaagggttgtatttatagtcctctat 41219934  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 123423 - 123489
Alignment:
Q  157 tatttatagtcctctatgggcttgatttcttgtgacttaaaccccaaacaataagggcatttaagtc 223  Q
    ||||||||| ||| |||| ||||||||||||||||||||| | |||| |||  ||||||||||||||    
T  123423 tatttatagccctatatgagcttgatttcttgtgacttaagctccaagcaacgagggcatttaagtc 123489  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 80948 - 81017
Alignment:
Q  157 tatttatagtcctctatgggcttgatttcttgtgacttaaaccccaaacaataagggcatttaagtcttt 226  Q
    ||||||||| ||||||||||||||||||   ||||||||| |||||| ||||  |||| |||||||||||    
T  80948 tatttatagccctctatgggcttgattttccgtgacttaagccccaagcaatgggggcttttaagtcttt 81017  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 13562674 - 13562743
Alignment:
Q  105 tattagggtttgatttgtattggtcatgctttaagaagatttttaaggatgatatttatagtcctctatg 174  Q
    ||||||||||||  |||||||||||||||||||||||| || | |||| |  ||||||||||| ||||||    
T  13562674 tattagggtttgtattgtattggtcatgctttaagaaggttctcaagggttgtatttatagtcatctatg 13562743  T

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