View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_102 (Length: 237)

Name: NF14784_low_102
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_102
NF14784_low_102
[»] chr7 (3 HSPs)
chr7 (3-221)||(21749508-21749724)
chr7 (12-101)||(20572302-20572390)
chr7 (80-142)||(23922206-23922267)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-222)||(15679-15903)
[»] scaffold0430 (1 HSPs)
scaffold0430 (1-223)||(10662-10883)
[»] chr4 (4 HSPs)
chr4 (1-153)||(3315744-3315896)
chr4 (1-155)||(45837911-45838071)
chr4 (82-142)||(2532182-2532242)
chr4 (165-223)||(3315653-3315709)
[»] chr3 (4 HSPs)
chr3 (165-223)||(27354731-27354788)
chr3 (81-142)||(23709391-23709452)
chr3 (81-142)||(23727847-23727908)
chr3 (81-142)||(23746303-23746364)
[»] chr5 (4 HSPs)
chr5 (12-101)||(25081200-25081288)
chr5 (12-101)||(25139169-25139257)
chr5 (1-39)||(25103620-25103658)
chr5 (1-39)||(25162713-25162751)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 21749724 - 21749508
Alignment:
Q  3 atccattgatagaaataaacactagtaatgtgttgatttgcaacttaattacaaatgtcataatattaatcaatcctaaatgatatctaatgtatactta 102  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21749724 atccattgatagaattaaacactagtaatgtgttgatttgaaacttaattacaaatgtcataatattaatcaatcctaaatgacatctaatgtatactta 21749625  T
Q  103 tataaaaatgaaaaggtcatgcacaatacatatatatgaaaagcaggcacaacnnnnnnnnncaccaaacattgagaggactcatgacaagcaatccaac 202  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  21749624 tataaaaatgaaaaagtcatgcacaatacatatatatgaaaagcaggcacaa--aaaaaaaacaccaaacattgagaggactcatgacaagcaatccaac 21749527  T
Q  203 gtttactcaatagatctac 221  Q
    |||||||||||||||||||    
T  21749526 gtttactcaatagatctac 21749508  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 20572390 - 20572302
Alignment:
Q  12 tagaaataaacactagtaatgtgttgatttgcaacttaattacaaatgtcataatattaatcaatcctaaatgatatctaatgtatactt 101  Q
    |||||||||||||||||||||||||| || | ||||||| ||||||||||||||||||||| |||| |||| || ||||| |||| ||||    
T  20572390 tagaaataaacactagtaatgtgttgtttagaaacttaa-tacaaatgtcataatattaattaatcataaaagacatctagtgtacactt 20572302  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 23922206 - 23922267
Alignment:
Q  80 aaatgatatctaatgtatacttatataaaaatgaaaaggtcatgcacaatacatatatatgaa 142  Q
    |||||| |||||||||| ||||| |||||| || |||| || |||||||||||||||||||||    
T  23922206 aaatgacatctaatgtacacttacataaaa-tgcaaagttcgtgcacaatacatatatatgaa 23922267  T

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Target: scaffold0182 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15903 - 15679
Alignment:
Q  1 taatccattgatagaaataaacactagtaatgtgttgatttgcaacttaattacaaatgtcataatattaatcaatcctaaatgatatctaatgtatact 100  Q
    |||||||||| |||||||||||||||||  |||||||||  | ||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| |    
T  15903 taatccattggtagaaataaacactagttttgtgttgatcagaaacttaattacaaatgttataatattaatcaatcctaaatgacatctaatatataat 15804  T
Q  101 tatataaaaatgaaaaggtcatgcacaatacatatatatgaaaagcaggcac---aacnnnnnnnnncaccaaacattgagaggactcatgacaagcaat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||           ||||||||||||||||||||||||||| ||||    
T  15803 tatataaaaatgaaaaggtcatgcacaatacatatatatgaaaagcaggcacacaaaaaaaaaaaaaaaccaaacattgagaggactcatgacaatcaat 15704  T
Q  198 ccaacgtttactcaatagatctacc 222  Q
    |||||||||||||||||||||||||    
T  15703 ccaacgtttactcaatagatctacc 15679  T

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Target: scaffold0430 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10662 - 10883
Alignment:
Q  1 taatccattgatagaaataaacactagtaatgtgttgatttgcaacttaattacaaatgtcataatattaatcaatcctaaatgatatctaatgtatact 100  Q
    ||||| |||||| ||||||||||||| |||| |||||||  | |||||||||||||||||||||||||| |||||||||||| || |||||||||| |||    
T  10662 taatctattgattgaaataaacactaataatttgttgatcagaaacttaattacaaatgtcataatattcatcaatcctaaaagacatctaatgtacact 10761  T
Q  101 tatataaaaatgaaaaggtcatgcacaatacatatatatgaaaagcaggcacaac-nnnnnnnnncaccaaacattgagaggactcatgacaagcaatcc 199  Q
    |  ||||||||| |||| || ||||||||||||||||||||||||||| ||||||           ||||||||||||||||||||||||||||| ||||    
T  10762 tgaataaaaatggaaagttcgtgcacaatacatatatatgaaaagcagccacaacaaaaaaaaaaaaccaaacattgagaggactcatgacaagccatcc 10861  T
Q  200 aacgtttactcaatagatctacct 223  Q
    ||   |||||||||||||||||||    
T  10862 aa--attactcaatagatctacct 10883  T

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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 3315896 - 3315744
Alignment:
Q  1 taatccattgatagaaataaacactagtaatgtgttgatttgcaacttaattacaaatgtcataa-tattaatcaatcctaaatgatatctaatgtatac 99  Q
    ||||||||||||||||||||||||||||||| |||||||  | |||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||    
T  3315896 taatccattgatagaaataaacactagtaat-tgttgatcagaaacttaattacaaatgtcataaatattaatcaatcctaaatgacatctaatgtacac 3315798  T
Q  100 ttatataaaaatgaaaaggtcatgcacaatacatatatatgaaaagcaggcaca 153  Q
    ||  ||||||||| |||| || ||||||||||||||||||||||||||| ||||    
T  3315797 ttgcataaaaatggaaagttcgtgcacaatacatatatatgaaaagcagccaca 3315744  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 45838071 - 45837911
Alignment:
Q  1 taatccattgatagaaataaacactagtaatgtgttgatttgcaacttaattacaaatgtcataa-tattaatcaatcctaaatgatatctaatg---ta 96  Q
    ||||||||||||||||||||||||||||||| |||||||  | |||||||||||||||||||||| |||||||||||||||||||| |||||||    ||    
T  45838071 taatccattgatagaaataaacactagtaatttgttgatcagaaacttaattacaaatgtcataaatattaatcaatcctaaatgacatctaataatcta 45837972  T
Q  97 tacttatataaaaatgaaaaggtcatgcacaatacatat--atatgaaaagcaggcacaac 155  Q
     ||||  ||||||||| |||| || ||||||||||||||  ||||||||||||| ||||||    
T  45837971 cacttgcataaaaatggaaagttcgtgcacaatacatatatatatgaaaagcagccacaac 45837911  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 2532242 - 2532182
Alignment:
Q  82 atgatatctaatgtatacttatataaaaatgaaaaggtcatgcacaatacatatatatgaa 142  Q
    |||| |||||||||| ||||| ||||||||| ||||   ||||||||||||||||||||||    
T  2532242 atgacatctaatgtacacttacataaaaatgcaaagtctatgcacaatacatatatatgaa 2532182  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 3315709 - 3315653
Alignment:
Q  165 caccaaacattgagaggactcatgacaagcaatccaacgtttactcaatagatctacct 223  Q
    ||||||||||| ||||||||| |||||||| ||||||   |||||||||||||||||||    
T  3315709 caccaaacattaagaggactcgtgacaagcgatccaa--attactcaatagatctacct 3315653  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 27354731 - 27354788
Alignment:
Q  165 caccaaacattgagaggactcatgacaagcaatccaacgtttactcaatagatctacct 223  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27354731 caccaaacat-gagaggactcatgacaagcgatccaacgtttactcaatagatctacct 27354788  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 23709452 - 23709391
Alignment:
Q  81 aatgatatctaatgtatacttatataaaaatgaaaaggtcatgcacaatacatatatatgaa 142  Q
    ||||| ||| |||||| ||||| ||||||||| ||||   ||||||||||||||||||||||    
T  23709452 aatgacatccaatgtacacttacataaaaatgcaaagtctatgcacaatacatatatatgaa 23709391  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 23727908 - 23727847
Alignment:
Q  81 aatgatatctaatgtatacttatataaaaatgaaaaggtcatgcacaatacatatatatgaa 142  Q
    ||||| ||| |||||| ||||| ||||||||| ||||   ||||||||||||||||||||||    
T  23727908 aatgacatccaatgtacacttacataaaaatgcaaagtctatgcacaatacatatatatgaa 23727847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 23746364 - 23746303
Alignment:
Q  81 aatgatatctaatgtatacttatataaaaatgaaaaggtcatgcacaatacatatatatgaa 142  Q
    ||||| ||| |||||| ||||| ||||||||| ||||   ||||||||||||||||||||||    
T  23746364 aatgacatccaatgtacacttacataaaaatgcaaagcctatgcacaatacatatatatgaa 23746303  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 25081288 - 25081200
Alignment:
Q  12 tagaaataaacactagtaatgtgttgatttgcaacttaattacaaatgtcataatattaatcaatcctaaatgatatctaatgtatactt 101  Q
    |||||||||||||||||||||||||| || | ||||||| ||||||||||||||||||||| |||| |||| || ||||| |||| ||||    
T  25081288 tagaaataaacactagtaatgtgttgtttagaaacttaa-tacaaatgtcataatattaattaatcataaaagacatctagtgtacactt 25081200  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 25139257 - 25139169
Alignment:
Q  12 tagaaataaacactagtaatgtgttgatttgcaacttaattacaaatgtcataatattaatcaatcctaaatgatatctaatgtatactt 101  Q
    |||||||||||||||||||||||||| || | ||||||| ||||||||||||||||||||| |||| |||| || ||||| |||| ||||    
T  25139257 tagaaataaacactagtaatgtgttgtttagaaacttaa-tacaaatgtcataatattaattaatcataaaagacatctagtgtacactt 25139169  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25103620 - 25103658
Alignment:
Q  1 taatccattgatagaaataaacactagtaatgtgttgat 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  25103620 taatccattgataaaaataaacactagtaatttgttgat 25103658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25162713 - 25162751
Alignment:
Q  1 taatccattgatagaaataaacactagtaatgtgttgat 39  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  25162713 taatccattgataaaaataaacactagtaatttgttgat 25162751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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