View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_103 (Length: 236)
Name: NF14784_low_103
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 17976344 - 17976557
Alignment:
| Q |
14 |
catcaacaacaaaattacaccaacctttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccactgcctctgtaaacgattt |
113 |
Q |
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| T |
17976344 |
catcaacaacaaaattacaccaacctttagccgttggataatacacaacttcaaaagccaagttcttatccgccaattccactgcctccgtaaacgattt |
17976443 |
T |
|
| Q |
114 |
ttccgttatcttagcagcagcaccaaacttagtctgtcggcgaaccccgactgagatatttccatctgagcctttcatgaaaattaaggaatcaccgcca |
213 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17976444 |
ttctgttatcttagcagcaccaccaaacttagtctgtcggcgaaccccgactgagatatttccatctgagtctttcatgaaaattaaggaatcaccgcca |
17976543 |
T |
|
| Q |
214 |
actagtttcttctt |
227 |
Q |
| |
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|||||| ||||||| |
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| T |
17976544 |
actagtctcttctt |
17976557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 35273768 - 35273654
Alignment:
| Q |
22 |
acaaaattacaccaacctttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccactgcctctgtaaacgatttttccgtta |
121 |
Q |
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| T |
35273768 |
acaaaattacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgtta |
35273669 |
T |
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| Q |
122 |
tcttagcagcagcac |
136 |
Q |
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||||||||||||||| |
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| T |
35273668 |
tcttagcagcagcac |
35273654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 17914816 - 17914695
Alignment:
| Q |
22 |
acaaaattacaccaacctttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccactgcctctgtaaacgatttttccgtta |
121 |
Q |
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||||||| ||||||||||| ||| || |||||||||||||| || ||||||| |||||| || ||||||||||| ||||| |||| |||||||| | || |
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| T |
17914816 |
acaaaatcacaccaaccttcagcagtaggataatacacaacatcgaaagccatgttcttctccgccaattccacagcctcggtaacagatttttctgcta |
17914717 |
T |
|
| Q |
122 |
tcttagcagcagcaccaaactt |
143 |
Q |
| |
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| |||| |||||||||||||| |
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| T |
17914716 |
ttttagtggcagcaccaaactt |
17914695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 25090397 - 25090342
Alignment:
| Q |
40 |
ttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccac |
95 |
Q |
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||||||||||||||||||||||||| ||| |||| |||||| | ||||||||||| |
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| T |
25090397 |
ttagccgtcggataatacacaacttgaaatgccatgttcttcccagccaattccac |
25090342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 25148367 - 25148312
Alignment:
| Q |
40 |
ttagccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccac |
95 |
Q |
| |
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||||||||||||||||||||||||| ||| |||| |||||| | ||||||||||| |
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| T |
25148367 |
ttagccgtcggataatacacaacttgaaatgccatgttcttcccagccaattccac |
25148312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 8823743 - 8823655
Alignment:
| Q |
44 |
ccgtcggataatacacaacttcaaaagccaagttcttatctgccaattccactgcctctgtaaacgatttttccgttatcttagcagca |
132 |
Q |
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|||| |||| |||| ||||||||||||| | |||||||| ||||| ||||||||||| ||| ||||| || ||||||||||||||| |
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| T |
8823743 |
ccgtaggatgatactcaacttcaaaagcgatgttcttattcgccaactccactgcctccataaccgattctttagttatcttagcagca |
8823655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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