View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_106 (Length: 232)
Name: NF14784_low_106
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_106 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 43907269 - 43907466
Alignment:
| Q |
20 |
acatggaagcgtaaaacaaactcatttcatctggtctcttcatgcagtatgcatatgctccttctccgtgtagcttctcgaacggctcaacagttggatc |
119 |
Q |
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| T |
43907269 |
acatggaagcgtaaaacaaactcatttcatctggtctcttcatgcagtatgcatatgctccttctccgtgtagcttctcgaacggctcaacagttggatc |
43907368 |
T |
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| Q |
120 |
ctccaccgcctctcccaccagcggccatgctcgcaggtactggtcctatataaattaaaccctccacgtttgaatttttgttttg-tttgaggttcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43907369 |
ctccaccgcctctcccaccagcggccatgctcgcaggtactggtcctatataaattaaaccctccacgtttgaatttttgttttgttttgaggttcat |
43907466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 43895765 - 43895911
Alignment:
| Q |
20 |
acatggaagcgtaaaacaaactcatttcatctggtctcttcatgcagtatgcatatgctccttctccgtgtagcttctcgaacggctcaacagttggatc |
119 |
Q |
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|||||||||| ||||||||||||||||| ||||||| |||| |||| |||||||||||| |||||||||| |||||||||||||| || ||||||||||| |
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| T |
43895765 |
acatggaagcataaaacaaactcatttcttctggtcccttcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatc |
43895864 |
T |
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| Q |
120 |
ctccaccgcctctcccaccagcggccatgctcgcaggtactggtcct |
166 |
Q |
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| T |
43895865 |
ctccaccgcgtctcccaccaacggccatgctcgcaggtacgggtcct |
43895911 |
T |
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