View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_107 (Length: 231)
Name: NF14784_low_107
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_107 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 3094028 - 3093827
Alignment:
| Q |
11 |
gaagaatatagagatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttattatgatgtatt |
110 |
Q |
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| T |
3094028 |
gaagaatatagagatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttattatgatgtatt |
3093929 |
T |
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| Q |
111 |
atggtatgatcaagaactctgagcaagaactaaattctgttaaattcttactagatcattgtaagcaaaatcttgaaccctacttatcaattcatcattc |
210 |
Q |
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| T |
3093928 |
atggtatgatcaagaactctgagctagaactaaattctgttaaattcttactagatcattgtaagcaaaatcttgaaccctacttatcaattcatcattc |
3093829 |
T |
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| Q |
211 |
tt |
212 |
Q |
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| T |
3093828 |
tt |
3093827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 3104411 - 3104485
Alignment:
| Q |
26 |
gatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
100 |
Q |
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| T |
3104411 |
gatgcaatggattcaattatttttgagtcggatattcgtgcagaattccccgttcatggatgtgttggtgttatt |
3104485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 3080696 - 3080616
Alignment:
| Q |
20 |
agagatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
100 |
Q |
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| T |
3080696 |
agagatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttatt |
3080616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 41122107 - 41122185
Alignment:
| Q |
22 |
agatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
100 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||| | ||||||| |
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| T |
41122107 |
agatgaagcaatgaaatcaattatctttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttatt |
41122185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 36915166 - 36915247
Alignment:
| Q |
22 |
agatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttattatg |
103 |
Q |
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| T |
36915166 |
agatgttgcgatgagatccataattattgagtcggatattcgtgcaaaatttcccgttcatggatgtcttggtgttattatg |
36915247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 14994433 - 14994389
Alignment:
| Q |
23 |
gatgatgcaatgaaatcaattattattgagtcggatatgcgtgct |
67 |
Q |
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| T |
14994433 |
gatgatgcaatgaaatcaattatttcggagtcggatatgcatgct |
14994389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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