View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14784_low_108 (Length: 231)
Name: NF14784_low_108
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14784_low_108 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 18854991 - 18855209
Alignment:
| Q |
13 |
ataattctctctgaaacaccaaaataattaaataagatcatataacaagaacaaaattatccaacaataggtaacttcaaaatggtttcttattatttta |
112 |
Q |
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| T |
18854991 |
ataattctctctgaaacaccaaaataattaaataagatcatataacaagaacaaaattatccaacaataggtaacttcaaaatggtttctgatttttttt |
18855090 |
T |
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| Q |
113 |
nnnnnnnatagattcaaactggtttctgatatttctatagccattccactcaaaaattaaattgcatctctaaattgctcggtatttgtcgctcgtgaag |
212 |
Q |
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| T |
18855091 |
ttttttgaaagattcaaactggtttctgatatttctatagccattccactcaaaaattaaattgcatctctaaattgctcggtatttgtcgctcgtgaag |
18855190 |
T |
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| Q |
213 |
aaaatctagcagaaaaaca |
231 |
Q |
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| T |
18855191 |
aaaatctagcagaaaaaca |
18855209 |
T |
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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 42868220 - 42868306
Alignment:
| Q |
14 |
taattctctctgaaacaccaaaataattaaataagatcatataacaagaacaaaattatccaacaataggtaacttcaaaatggtttct |
102 |
Q |
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|||||||||||| | ||||||||| |||||||||||| ||||||||||| |||||| | ||||||||||||||||| ||||||||||| |
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| T |
42868220 |
taattctctctgcagcaccaaaatcattaaataagataatataacaaga--aaaattttacaacaataggtaacttctaaatggtttct |
42868306 |
T |
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