View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_11 (Length: 484)

Name: NF14784_low_11
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_11
NF14784_low_11
[»] chr5 (10 HSPs)
chr5 (5-468)||(26797978-26798441)
chr5 (256-454)||(26825732-26825930)
chr5 (17-104)||(26801250-26801337)
chr5 (17-104)||(26808800-26808887)
chr5 (17-104)||(26816190-26816277)
chr5 (17-104)||(26823827-26823914)
chr5 (17-104)||(26797624-26797708)
chr5 (439-468)||(26802585-26802614)
chr5 (439-468)||(26810135-26810164)
chr5 (439-468)||(26825162-26825191)
[»] chr3 (29 HSPs)
chr3 (5-468)||(10218507-10218970)
chr3 (18-245)||(10255639-10255866)
chr3 (16-245)||(10018145-10018372)
chr3 (245-450)||(10108543-10108748)
chr3 (256-454)||(10229778-10229976)
chr3 (245-450)||(10233377-10233582)
chr3 (87-245)||(10118590-10118748)
chr3 (245-454)||(9998773-9998968)
chr3 (6-104)||(10138042-10138141)
chr3 (348-452)||(10439597-10439701)
chr3 (18-87)||(10122841-10122910)
chr3 (17-104)||(10227873-10227960)
chr3 (17-104)||(10218153-10218237)
chr3 (35-137)||(10194761-10194858)
chr3 (35-137)||(10087878-10087975)
chr3 (82-134)||(10075813-10075865)
chr3 (382-448)||(11767636-11767702)
chr3 (16-61)||(10122911-10122956)
chr3 (16-61)||(10255867-10255912)
chr3 (16-60)||(10018372-10018416)
chr3 (362-440)||(10499709-10499788)
chr3 (48-102)||(10499749-10499803)
chr3 (416-452)||(10364768-10364804)
chr3 (416-468)||(10376828-10376880)
chr3 (439-468)||(9998200-9998229)
chr3 (6-57)||(10075860-10075908)
chr3 (439-468)||(10107972-10108001)
chr3 (439-468)||(10229208-10229237)
chr3 (439-468)||(10232804-10232833)
[»] scaffold0083 (1 HSPs)
scaffold0083 (6-137)||(51836-51969)
[»] chr2 (1 HSPs)
chr2 (26-102)||(26891605-26891681)
[»] chr8 (2 HSPs)
chr8 (69-110)||(11484132-11484173)
chr8 (370-410)||(11484131-11484171)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 5 - 468
Target Start/End: Complemental strand, 26798441 - 26797978
Alignment:
Q  5 atgaatagtgatagtaataactaataatagtacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26798441 atgaatagtgatagtaataactaataatagtacttgtttgttggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatg 26798342  T
Q  105 ttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttgttaaatatgtggttaattcatttgttgataaagttgcacacgtaaat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26798341 ttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaaat 26798242  T
Q  205 agaannnnnnn-gaagataattaagagctatggagattgaattatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcgag 303  Q
    ||||        |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26798241 agaaaactttttgaaggtaattaagagctatggagattgaattatagaaatgattggaagtaagagctatatgaatgcaattaaggagtaaagactcgag 26798142  T
Q  304 aggatattagcatgtgcatatagtaattaagagcatgtgaatgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatag 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26798141 aggatattagcatgtgcatatagtaattaagagcatgtgaatgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatag 26798042  T
Q  404 ttgcacactttaaaagcaattgccatctttgaagtttgaatgataaattttattgtggaacattt 468  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  26798041 ttgcacactttaaaagcaattggcatctttg-agtttgaatgataaatttttttgtggaacattt 26797978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 256 - 454
Target Start/End: Complemental strand, 26825930 - 26825732
Alignment:
Q  256 attggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaattaagagcatgtgaatgaaataatgc 355  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |     ||||||||||||||||||    
T  26825930 attggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaaagactcatatgtgaatgaaataatgc 26825831  T
Q  356 ttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattgccatctttgaagtttgaatgataaatttt 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  26825830 ttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgataattttt 26825732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 26801337 - 26801250
Alignment:
Q  17 agtaataactaataatagtacttgtttgttggctcaa---taatggtttattgaactacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||||||||||||||   |||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26801337 agtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatg 26801250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 26808887 - 26808800
Alignment:
Q  17 agtaataactaataatagtacttgtttgttggctcaa---taatggtttattgaactacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||||||||||||||   |||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26808887 agtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatg 26808800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 26816277 - 26816190
Alignment:
Q  17 agtaataactaataatagtacttgtttgttggctcaa---taatggtttattgaactacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||||||||||||||   |||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26816277 agtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatg 26816190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 26823914 - 26823827
Alignment:
Q  17 agtaataactaataatagtacttgtttgttggctcaa---taatggtttattgaactacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||||||||||||||   |||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26823914 agtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatg 26823827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 26797708 - 26797624
Alignment:
Q  17 agtaataactaataatagtacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||||||||||||||   |||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||    
T  26797708 agtaataactaataatagt---tgtttgttggctcaataatggtttatggagctacatctgacataacaataaatatacaaagaaatg 26797624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Complemental strand, 26802614 - 26802585
Alignment:
Q  439 ttgaatgataaattttattgtggaacattt 468  Q
    ||||||||||||||||||||||||||||||    
T  26802614 ttgaatgataaattttattgtggaacattt 26802585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Complemental strand, 26810164 - 26810135
Alignment:
Q  439 ttgaatgataaattttattgtggaacattt 468  Q
    ||||||||||||||||||||||||||||||    
T  26810164 ttgaatgataaattttattgtggaacattt 26810135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Complemental strand, 26825191 - 26825162
Alignment:
Q  439 ttgaatgataaattttattgtggaacattt 468  Q
    ||||||||||||||||||||||||||||||    
T  26825191 ttgaatgataaattttattgtggaacattt 26825162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 5 - 468
Target Start/End: Complemental strand, 10218970 - 10218507
Alignment:
Q  5 atgaatagtgatagtaataactaataatagtacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10218970 atgaatagtgatagtaataactaataatagtacttgtttgttggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatg 10218871  T
Q  105 ttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttgttaaatatgtggttaattcatttgttgataaagttgcacacgtaaat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10218870 ttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaaat 10218771  T
Q  205 agaannnnnnn-gaagataattaagagctatggagattgaattatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcgag 303  Q
    ||||        |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10218770 agaaaactttttgaaggtaattaagagctatggagattgaattatagaaatgattggaagtaagagctatatgaatgcaattaaggagtaaagactcgag 10218671  T
Q  304 aggatattagcatgtgcatatagtaattaagagcatgtgaatgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatag 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10218670 aggatattagcatgtgcatatagtaattaagagcatgtgaatgaaataatgcttgttattggacccacatcagacaaaataatagatatacaaagaatag 10218571  T
Q  404 ttgcacactttaaaagcaattgccatctttgaagtttgaatgataaattttattgtggaacattt 468  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  10218570 ttgcacactttaaaagcaattggcatctttg-agtttgaatgataaatttttttgtggaacattt 10218507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 10255866 - 10255639
Alignment:
Q  18 gtaataactaataatagtacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaatgttgcacgcataaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255866 gtaataactaataatagtacttgtttgttggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatgttgcacgcataaa 10255767  T
Q  118 ttgcaacttgcatctttgaaatatcttggacatcttgttgttaaatatgtggttaattcatttgttgataaagttgcacacgtaaatagaannnnnnnga 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |       ||    
T  10255766 ttgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaaatagcaaaattttga 10255667  T
Q  218 agataattaagagctatggagattgaat 245  Q
    || |||||||||||||||||||||||||    
T  10255666 aggtaattaagagctatggagattgaat 10255639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 10018372 - 10018145
Alignment:
Q  16 tagtaataactaataatagtacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaatgttgcacgcata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  10018372 tagtaataactaataatagtacttgtttgttggctcaataatggtttatggaactacatctgacaa--taataaatatacaaagaaatgttgcacgcata 10018275  T
Q  116 aattgcaacttgcatctttgaaatatcttggacatcttgttgttaaatatgtggttaattcatttgttgataaagttgcacacgtaaatagaannnnnnn 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |           
T  10018274 aattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaaatagcaaaatttt 10018175  T
Q  216 gaagataattaagagctatggagattgaat 245  Q
     ||| |||||||||||||||||||||||||    
T  10018174 aaaggtaattaagagctatggagattgaat 10018145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 245 - 450
Target Start/End: Complemental strand, 10108748 - 10108543
Alignment:
Q  245 ttatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaattaagagcatgtgaa 344  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |     |||||||    
T  10108748 ttatagaaatgattggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaaagactcatatgtgaa 10108649  T
Q  345 tgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattgccatctttgaagtttgaat 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10108648 tgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaat 10108549  T
Q  445 gataaa 450  Q
    ||||||    
T  10108548 gataaa 10108543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 256 - 454
Target Start/End: Complemental strand, 10229976 - 10229778
Alignment:
Q  256 attggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaattaagagcatgtgaatgaaataatgc 355  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |     ||||||||||||||||||    
T  10229976 attggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaaagactcatatgtgaatgaaataatgc 10229877  T
Q  356 ttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattgccatctttgaagtttgaatgataaatttt 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  10229876 ttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgataattttt 10229778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 245 - 450
Target Start/End: Complemental strand, 10233582 - 10233377
Alignment:
Q  245 ttatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaattaagagcatgtgaa 344  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |     |||||||    
T  10233582 ttatagaaatgattggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaaagactcatatgtgaa 10233483  T
Q  345 tgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattgccatctttgaagtttgaat 444  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  10233482 tgaaataatgcttgttaatggacccacatcagaaaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatttttgaagtttgaat 10233383  T
Q  445 gataaa 450  Q
    ||||||    
T  10233382 gataaa 10233377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 87 - 245
Target Start/End: Complemental strand, 10118748 - 10118590
Alignment:
Q  87 taaatatacaaagaaatgttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttgttaaatatgtggttaattcatttgttgat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10118748 taaatatacaaagaaatgttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgat 10118649  T
Q  187 aaagttgcacacgtaaatagaannnnnnngaagataattaagagctatggagattgaat 245  Q
    |||| ||||||||||||||| |       |||| |||||||||||||||||||||||||    
T  10118648 aaagctgcacacgtaaatagcaaaattttgaaggtaattaagagctatggagattgaat 10118590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 245 - 454
Target Start/End: Complemental strand, 9998968 - 9998773
Alignment:
Q  245 ttatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaattaagagcatgtgaa 344  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||              |||||  |     |||||||    
T  9998968 ttatagaaatgattggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatat--------------agtaaagactcatatgtgaa 9998883  T
Q  345 tgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattgccatctttgaagtttgaat 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9998882 tgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaat 9998783  T

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Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 10138141 - 10138042
Alignment:
Q  6 tgaatagtgatagtaataactaataatagtacttgtttgttggctcaataatggtttattgaac-tacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  10138141 tgaatagtaatagtaataactaataatagtacttgtttgttggctcaataatggtttatggaacttgcatctgacaaaataataaatatacaaagaaatg 10138042  T

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Target: chr3; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 348 - 452
Target Start/End: Complemental strand, 10439701 - 10439597
Alignment:
Q  348 aataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattgccatctttgaagtttgaatgat 447  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |||  || |||||||||||||    
T  10439701 aataatgcttgtttatggacccacatcagacaaaataatagatatccaaagaaaagttgcacactttcaaagcaattggcattattaaagtttgaatgat 10439602  T
Q  448 aaatt 452  Q
    |||||    
T  10439601 aaatt 10439597  T

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Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 10122910 - 10122841
Alignment:
Q  18 gtaataactaataatagtacttgtttgttggctcaataatggtttattgaactacatctgacaaaataat 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  10122910 gtaataactaataatagtacttgtttgttggctcaataatggtttatggaactccatctgacaaaataat 10122841  T

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Target: chr3; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 10227960 - 10227873
Alignment:
Q  17 agtaataactaataatagtacttgtttgttggctcaa---taatggtttattgaactacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||||||||||||||   |||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10227960 agtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatg 10227873  T

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Target: chr3; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 10218237 - 10218153
Alignment:
Q  17 agtaataactaataatagtacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaatg 104  Q
    |||||||||||||||||||   |||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||    
T  10218237 agtaataactaataatagt---tgtttgttggctcaataatggtttatggagctacatctgacataacaataaatatacaaagaaatg 10218153  T

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Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 10194858 - 10194761
Alignment:
Q  35 tacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaatgttgcacgcataaattgcaacttgcatcttt 134  Q
    |||||||||||||||||| |||||||| || || ||||||||||||||||||||    ||||| |||||||||||||| |||| |||||||| |||||||    
T  10194858 tacttgtttgttggctca-taatggttaatggatctacatctgacaaaataata----tacaaggaaatgttgcacgcgtaaaatgcaacttacatcttt 10194764  T

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Target: chr3; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 10087975 - 10087878
Alignment:
Q  35 tacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaatgttgcacgcataaattgcaacttgcatcttt 134  Q
    |||||||||||||||||| |||||||| || || |||| |||||||||||||||    ||||| ||||||||| |||| |||| ||||||||||||||||    
T  10087975 tacttgtttgttggctca-taatggttaatggatctacttctgacaaaataata----tacaaggaaatgttgtacgcgtaaaatgcaacttgcatcttt 10087881  T

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Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 10075865 - 10075813
Alignment:
Q  82 aataataaatatacaaagaaatgttgcacgcataaattgcaacttgcatcttt 134  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  10075865 aataataaatatacaaagaaatgttgcacacataaaatgcaacttgcatcttt 10075813  T

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Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 448
Target Start/End: Complemental strand, 11767702 - 11767636
Alignment:
Q  382 ataatagatatacaaagaatagttgcacactttaaaagcaattgccatctttgaagtttgaatgata 448  Q
    |||||||||||||| |||| ||||| |||||| ||||||||||| ||||||||||||||||| ||||    
T  11767702 ataatagatatacatagaaaagttgtacacttcaaaagcaattggcatctttgaagtttgaacgata 11767636  T

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Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 10122956 - 10122911
Alignment:
Q  16 tagtaataactaataatagtacttgtttgttggctcaataatggtt 61  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  10122956 tagtaataactaataatagtacttgtttgttggctcaacaatggtt 10122911  T

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Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 10255912 - 10255867
Alignment:
Q  16 tagtaataactaataatagtacttgtttgttggctcaataatggtt 61  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  10255912 tagtaataactaataatagtacttgtttgttggctcaacaatggtt 10255867  T

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Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 10018416 - 10018372
Alignment:
Q  16 tagtaataactaataatagtacttgtttgttggctcaataatggt 60  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  10018416 tagtaataactaataatagtacttgtttgttggctcaacaatggt 10018372  T

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Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 10499788 - 10499709
Alignment:
Q  362 atggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattgccatctttgaagttt 440  Q
    ||||| ||||||| ||| |||||||| |||||||||||| |||| ||||| | |||| ||||||||||||||||||||||    
T  10499788 atggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattgccatctttgaagttt 10499709  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 10499803 - 10499749
Alignment:
Q  48 gctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaa 102  Q
    ||||| ||||||||||| || | ||||||||| ||||||||||||||||||||||    
T  10499803 gctcattaatggtttatggatccacatctgactaaataataaatatacaaagaaa 10499749  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 452
Target Start/End: Original strand, 10364768 - 10364804
Alignment:
Q  416 aaagcaattgccatctttgaagtttgaatgataaatt 452  Q
    |||||||||| ||||||||||||||||||||||||||    
T  10364768 aaagcaattggcatctttgaagtttgaatgataaatt 10364804  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 10376828 - 10376880
Alignment:
Q  416 aaagcaattgccatctttgaagtttgaatgataaattttattgtggaacattt 468  Q
    |||| ||||| |||||||||||||||||||||||||| || |||||| |||||    
T  10376828 aaaggaattggcatctttgaagtttgaatgataaattctactgtggaccattt 10376880  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Complemental strand, 9998229 - 9998200
Alignment:
Q  439 ttgaatgataaattttattgtggaacattt 468  Q
    ||||||||||||||||||||||||||||||    
T  9998229 ttgaatgataaattttattgtggaacattt 9998200  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 10075908 - 10075860
Alignment:
Q  6 tgaatagtgatagtaataactaataatagtacttgtttgttggctcaataat 57  Q
    |||||| | ||||||||||||||||||||   ||||||||||||||||||||    
T  10075908 tgaataataatagtaataactaataatag---ttgtttgttggctcaataat 10075860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Complemental strand, 10108001 - 10107972
Alignment:
Q  439 ttgaatgataaattttattgtggaacattt 468  Q
    ||||||||||||||||||||||||||||||    
T  10108001 ttgaatgataaattttattgtggaacattt 10107972  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Complemental strand, 10229237 - 10229208
Alignment:
Q  439 ttgaatgataaattttattgtggaacattt 468  Q
    ||||||||||||||||||||||||||||||    
T  10229237 ttgaatgataaattttattgtggaacattt 10229208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Complemental strand, 10232833 - 10232804
Alignment:
Q  439 ttgaatgataaattttattgtggaacattt 468  Q
    ||||||||||||||||||||||||||||||    
T  10232833 ttgaatgataaattttattgtggaacattt 10232804  T

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Target: scaffold0083 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 51836 - 51969
Alignment:
Q  6 tgaatagtgatagtaataactaataatagtacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataa--atatacaaagaaat 103  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  |||||| |||||||    
T  51836 tgaatagtaatagtaatagctaataatagtacttgtttgttggctcaataatggtttttggaactacatctgacaaaataataaatatataccaagaaat 51935  T
Q  104 gttgcacgcataaattgcaacttgcatctttgaa 137  Q
     | || | |||||| ||||||||| |||||||||    
T  51936 atggcccacataaaatgcaacttgtatctttgaa 51969  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 26891681 - 26891605
Alignment:
Q  26 taataatagtacttgtttgttggctcaataatggtttattgaactacatctgacaaaataataaatatacaaagaaa 102  Q
    |||||||| |||| ||||||||||||| |||||| |||| || ||||||||||||||||||||| |||| |||||||    
T  26891681 taataataatactcgtttgttggctcattaatggattatggatctacatctgacaaaataataagtatataaagaaa 26891605  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 11484173 - 11484132
Alignment:
Q  69 ctacatctgacaaaataataaatatacaaagaaatgttgcac 110  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  11484173 ctacatctgacaaaataataaatatacaaagaaaagttgcac 11484132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 11484171 - 11484131
Alignment:
Q  370 acatcagacaaaataatagatatacaaagaatagttgcaca 410  Q
    ||||| |||||||||||| |||||||||||| |||||||||    
T  11484171 acatctgacaaaataataaatatacaaagaaaagttgcaca 11484131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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