View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14784_low_114 (Length: 214)

Name: NF14784_low_114
Description: NF14784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14784_low_114
NF14784_low_114
[»] chr1 (1 HSPs)
chr1 (8-205)||(5922654-5922851)
[»] chr8 (3 HSPs)
chr8 (9-199)||(35984105-35984295)
chr8 (9-200)||(12589477-12589668)
chr8 (9-204)||(31905855-31906050)
[»] chr6 (5 HSPs)
chr6 (9-205)||(29468919-29469115)
chr6 (9-203)||(28490742-28490936)
chr6 (9-203)||(29803152-29803346)
chr6 (9-139)||(29695668-29695798)
chr6 (165-204)||(27426951-27426990)
[»] scaffold0003 (1 HSPs)
scaffold0003 (165-204)||(60373-60412)
[»] chr4 (1 HSPs)
chr4 (165-204)||(18074565-18074604)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 5922654 - 5922851
Alignment:
Q  8 gacatcatcaagaaacaaaagaactttctttttgcggagcctctgttgtattattgtaattccttgtttaacacccgtcaactcaattttcttctctcca 107  Q
    ||||||||| |||| ||||||||| |||||||| |||||||| |||||||||| || |||||||||||||||||  || |||||||| | ||||||||||    
T  5922654 gacatcatctagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctcca 5922753  T
Q  108 actattttggaaagaagaatcttttggagataaggcaggccatgtttttctgtgttttctctg-acgttttcaagaaaacataaaccttcaaattgatg 205  Q
    | |||||   ||||||  ||||||||||||||   ||  |||||||| ||||  ||||| ||| | |||||||||||| ||| ||| ||||||||||||    
T  5922754 attatttccaaaagaatgatcttttggagatatatcaacccatgtttctctgaattttc-ctgaatgttttcaagaaagcatgaactttcaaattgatg 5922851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 35984295 - 35984105
Alignment:
Q  9 acatcatcaagaaacaaaagaactttctttttgc-ggagcctctgttgtattattgtaattccttgtttaacacccgtcaactcaattttcttctctcca 107  Q
    |||||||| |||| |||||||||||| ||||||| |||| || || | ||| | || |||||||||||| |||   || |||| ||||||||||||||||    
T  35984295 acatcatctagaatcaaaagaacttt-tttttgctggagtctatgctttatcactgaaattccttgtttgacatttgttaacttaattttcttctctcca 35984197  T
Q  108 actattttggaaagaagaatcttttggagataaggcaggccatgtttttctgtgttttctctgacgttttcaagaaaacataaaccttcaaa 199  Q
    | | |||  || |||||||||||||||||||   | |  || ||||| ||||  |||||||| |||||||||||||||||||||||||||||    
T  35984196 agtgtttctgagagaagaatcttttggagatgttgtaacccgtgtttgtctgaattttctctcacgttttcaagaaaacataaaccttcaaa 35984105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 12589668 - 12589477
Alignment:
Q  9 acatcatcaagaaacaaaagaactttctttttgcggagcctctgttgtattattgtaattccttgtttaacacccgtcaactcaattttcttctctccaa 108  Q
    ||||| || |||| ||||||||| ||||||| ||||||||| ||||||| |||||  |||||||||  |||||  || ||||| || | |||||||||||    
T  12589668 acatcgtctagaagcaaaagaaccttcttttggcggagcctttgttgtaatattgacattccttgtccaacacttgttaactccatgtccttctctccaa 12589569  T
Q  109 ctattttggaaagaagaatcttttggagataaggcaggccatgtttttctgtgttttctctgacgttttcaagaaaacataaaccttcaaat 200  Q
      ||||  || ||||| ||||||||||||||   ||  |||| ||| || |  |||||||| || ||||||||||||||  |||||| ||||    
T  12589568 gaatttgagacagaaggatcttttggagatatatcaacccatttttctcagaattttctctaactttttcaagaaaacaggaaccttgaaat 12589477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 31906050 - 31905855
Alignment:
Q  9 acatcatcaagaaacaaaagaactttctttttgcggagcctctgttgtattattgtaattccttgtttaacacccgtcaactcaattttcttctctccaa 108  Q
    |||||||| |||| ||||||||| || ||||   |||| || || | |||||||| |||||||||||| ||||  || |||| ||||||||| |||||||    
T  31906050 acatcatctagaatcaaaagaacctttttttgttggagtctgtgctttattattgaaattccttgtttgacacttgttaacttaattttcttttctccaa 31905951  T
Q  109 ctattttggaaagaagaatcttttggagataaggcaggccatgtttttctgtgttttctctgacgttttcaagaaaacataaaccttcaaattgat 204  Q
       |||  ||||||||||||||||||||||   | |  || ||||| | ||  |||||||| || |||||||||||||| ||| ||||||| ||||    
T  31905950 gggtttctgaaagaagaatcttttggagatgttgtaacccgtgtttatttgaattttctctcacattttcaagaaaacacaaagcttcaaagtgat 31905855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 29469115 - 29468919
Alignment:
Q  9 acatcatcaagaaacaaaagaactttctttttgcggagcctctgttgtattattgtaattccttgtttaacacccgtcaactcaattttcttctctccaa 108  Q
    ||||| || |||| ||||||||| ||||||| | ||| ||| | ||||| ||||| |||||||||| ||||||  || |||||||| ||||| |||||||    
T  29469115 acatcgtctagaagcaaaagaaccttcttttggtggaaccttttttgtaatattgaaattccttgtctaacacttgttaactcaatgttcttttctccaa 29469016  T
Q  109 ctattttggaaagaagaatcttttggagataaggcaggccatgtttttctgtgttttctctgacgttttcaagaaaacataaaccttcaaattgatg 205  Q
    | | ||  || ||||| |||||||||||||    ||  |||| ||| ||||  |||||||| || ||||||||||||||  |||||| |||||||||    
T  29469015 caacttgagatagaaggatcttttggagatgtatcaacccatttttgtctgaattttctctaactttttcaagaaaacaggaaccttgaaattgatg 29468919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 28490742 - 28490936
Alignment:
Q  9 acatcatcaagaaacaaaagaactttctttttgcggagcctctgttgtattattgtaattccttgtttaacacccgtcaactcaattttcttctctccaa 108  Q
    |||||||| |||| ||||||||  ||||||| | ||||||| ||| |||  || | ||||||||||  |||||  || |||||||| |||||||||||||    
T  28490742 acatcatctagaagcaaaagaatcttcttttggtggagcctttgtcgtaacatggaaattccttgtccaacacttgttaactcaatgttcttctctccaa 28490841  T
Q  109 ctattttggaaagaagaatcttttggagataaggcaggccatgtttttctgtgttttctctgacgttttcaagaaaacataaaccttcaaattga 203  Q
      ||||  || | ||| ||||||||||||||   ||  |||| ||| ||||  |||||||| || ||||||||||||||  |||||| |||||||    
T  28490842 aaatttgagacaaaaggatcttttggagatatatcaacccatttttgtctgaattttctcttactttttcaagaaaacaggaaccttgaaattga 28490936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 29803152 - 29803346
Alignment:
Q  9 acatcatcaagaaacaaaagaactttctttttgcggagcctctgttgtattattgtaattccttgtttaacacccgtcaactcaattttcttctctccaa 108  Q
    |||||||| |||| ||||||||  ||||||| | ||||||| ||| |||  || | ||||||||||  |||||  || |||||||| |||||||||||||    
T  29803152 acatcatctagaagcaaaagaatcttcttttggtggagcctttgtcgtaacatggaaattccttgtccaacacttgttaactcaatgttcttctctccaa 29803251  T
Q  109 ctattttggaaagaagaatcttttggagataaggcaggccatgtttttctgtgttttctctgacgttttcaagaaaacataaaccttcaaattga 203  Q
      ||||  || | ||| ||||||||||||||   ||  |||| ||| ||||  |||||||| || ||||||||||||||  |||||| |||||||    
T  29803252 aaatttgagacaaaaggatcttttggagatatatcaacccatttttgtctgaattttctcttactttttcaagaaaacaggaaccttgaaattga 29803346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 29695668 - 29695798
Alignment:
Q  9 acatcatcaagaaacaaaagaactttctttttgcggagcctctgttgtattattgtaattccttgtttaacacccgtcaactcaattttcttctctccaa 108  Q
    |||||||| ||||  |||||||| ||||||| | | ||||| ||||||| ||||| || ||||||| ||||||  || | ||| || ||| |||||||||    
T  29695668 acatcatccagaagtaaaagaaccttcttttggtgaagcctttgttgtaatattgaaactccttgtctaacactggttatctccatgttcgtctctccaa 29695767  T
Q  109 ctattttggaaagaagaatcttttggagata 139  Q
    | ||||  || ||||| ||||||||||||||    
T  29695768 caatttgagacagaaggatcttttggagata 29695798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 27426951 - 27426990
Alignment:
Q  165 tctctgacgttttcaagaaaacataaaccttcaaattgat 204  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  27426951 tctctgacttgttcaagaaaacataaaccttcaaattgat 27426990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 60412 - 60373
Alignment:
Q  165 tctctgacgttttcaagaaaacataaaccttcaaattgat 204  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  60412 tctctgacttgttcaagaaaacataaaccttcaaattgat 60373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 18074604 - 18074565
Alignment:
Q  165 tctctgacgttttcaagaaaacataaaccttcaaattgat 204  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  18074604 tctctgacttgttcaagaaaacataaaccttcaaattgat 18074565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University